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Python 包装c+时出错+;使用carma(犰狳矩阵和numpy数组)使用pybind11初始化_Python_C++_Numpy_Armadillo_Pybind11 - Fatal编程技术网

Python 包装c+时出错+;使用carma(犰狳矩阵和numpy数组)使用pybind11初始化

Python 包装c+时出错+;使用carma(犰狳矩阵和numpy数组)使用pybind11初始化,python,c++,numpy,armadillo,pybind11,Python,C++,Numpy,Armadillo,Pybind11,我有一个简单的例子,试图使用犰狳矩阵和numpy数组,并以此为基础进行往返。在没有printarma()函数的情况下,代码可以正常工作,也就是说,只需使用pybind11包装代码即可编译,我可以在python中运行它。问题似乎出在卡玛身上。代码如下: #include <ostream> #include <iostream> #include <armadillo> #include <carma/carma.h> #include <py

我有一个简单的例子,试图使用犰狳矩阵和numpy数组,并以此为基础进行往返。在没有printarma()函数的情况下,代码可以正常工作,也就是说,只需使用pybind11包装代码即可编译,我可以在python中运行它。问题似乎出在卡玛身上。代码如下:

#include <ostream>
#include <iostream>
#include <armadillo>
#include <carma/carma.h>
#include <pybind11/pybind11.h>
#include <pybind11/numpy.h>

namespace py = pybind11;

using namespace std;

class Base
{
public:
    virtual void test() = 0;
    virtual void printarma() = 0;
};
class Derived: public Base
{

public:
    void printarma(py::array_t<double> & arr) {arma::Mat<double> mat = carma::arr_to_mat<double>(arr);
            std::cout << mat<< std::endl;}
    void test() {cout << "Test";}
};


PYBIND11_MODULE(example,m) {
    py::class_<Base>(m, "Base");

    py::class_<Derived, Base>(m, "Derived")
        .def(py::init<>())
        .def("test", &Derived::test);
        m.def("printarma", &Derived::printarma,py::arg("arr"));
} 
错误是:

In file included from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:47,
                 from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/numpy.h:12,
                 from /usr/local/include/carma/carma/converters.h:24,
                 from /usr/local/include/carma/carma/arraystore.h:1,
                 from /usr/local/include/carma/carma.h:1,
                 from abstrakt_test.cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/detail/init.h: In instantiation of ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = Derived; Args = {}; typename std::enable_if<(! std::is_constructible<_Tp, _Args>::value), int>::type <anonymous> = 0]’:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/detail/init.h:174:66:   required from ‘static void pybind11::detail::initimpl::constructor<Args>::execute(Class&, const Extra& ...) [with Class = pybind11::class_<Derived, Base>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type <anonymous> = 0; Args = {}]’
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:1148:9:   required from ‘pybind11::class_<type_, options>& pybind11::class_<type_, options>::def(const pybind11::detail::initimpl::constructor<Args ...>&, const Extra& ...) [with Args = {}; Extra = {}; type_ = Derived; options = {Base}]’
abstrakt_test.cpp:45:26:   required from here
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/detail/init.h:63:64: error: invalid new-expression of abstract class type ‘Derived’
 inline Class *construct_or_initialize(Args &&...args) { return new Class{std::forward<Args>(args)...}; }
                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
abstrakt_test.cpp:31:7: note:   because the following virtual functions are pure within ‘Derived’:
 class Derived: public Base
       ^~~~~~~
abstrakt_test.cpp:29:18: note:  ‘virtual void Base::printarma()’
     virtual void printarma() = 0;
                  ^~~~~~~~~
In file included from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/numpy.h:12,
                 from /usr/local/include/carma/carma/converters.h:24,
                 from /usr/local/include/carma/carma/arraystore.h:1,
                 from /usr/local/include/carma/carma.h:1,
                 from abstrakt_test.cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h: In instantiation of ‘void pybind11::cpp_function::initialize(Func&&, Return (*)(Args ...), const Extra& ...) [with Func = pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]::<lambda(Derived*, pybind11::array_t<double>&)>; Return = void; Args = {Derived*, pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]’:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:78:9:   required from ‘pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]’
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:819:22:   required from ‘pybind11::module& pybind11::module::def(const char*, Func&&, const Extra& ...) [with Func = void (Derived::*)(pybind11::array_t<double>&); Extra = {pybind11::arg}]’
abstrakt_test.cpp:47:55:   required from here
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:133:50: error: static assertion failed: The number of argument annotations does not match the number of function arguments
         static_assert(expected_num_args<Extra...>(sizeof...(Args), cast_in::has_args, cast_in::has_kwargs),
                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/attr.h:13,
                 from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:44,
                 from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/numpy.h:12,
                 from /usr/local/include/carma/carma/converters.h:24,
                 from /usr/local/include/carma/carma/arraystore.h:1,
                 from /usr/local/include/carma/carma.h:1,
                 from abstrakt_test.cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/cast.h:1958:57: error: ‘std::enable_if_t<std::is_void<_Res>::value, pybind11::detail::void_type> pybind11::detail::argument_loader<Args>::call(Func&&) && [with Return = void; Guard = pybind11::detail::void_type; Func = pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]::<lambda(Derived*, pybind11::array_t<double>&)>&; Args = {Derived*, pybind11::array_t<double, 16>&}; std::enable_if_t<std::is_void<_Res>::value, pybind11::detail::void_type> = pybind11::detail::void_type]’, declared using local type ‘pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]::<lambda(Derived*, pybind11::array_t<double>&)>’, is used but never defined [-fpermissive]
     enable_if_t<std::is_void<Return>::value, void_type> call(Func &&f) && {
包含在/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/pybind11.h:47中的文件中,
from/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/numpy.h:12,
从/usr/local/include/carma/carma/converters.h:24,
from/usr/local/include/carma/carma/arraystore.h:1,
from/usr/local/include/carma/carma.h:1,
来自abstrakt_测试。cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/detail/init.h:在“Class*pybind11::detail::initimpl::construct_或_initialize(Args&&&…[其中Class=Derived;Args={};typename std::enable_if::type=0]”的实例化中:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/detail/init.h:174:66:从“static void pybind11::detail::initimpl::constructor::execute(Class&,const Extra&…)[with Class=pybind11::Class;Extra={};typename std::enable_if::type=0;Args={}]
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/pybind11.h:1148:9:必须来自“pybind11::class_u&pybind11::class_u::def(const pybind11::detail::initimpl::constructor&,const Extra&…)[带参数={};Extra={};type_=派生;options={Base}]
abstrakt_测试。cpp:45:26:此处需要
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/detail/init.h:63:64:错误:抽象类类型为“派生”的新表达式无效
内联类*构造或初始化(Args&&…Args){返回新类{std::forward(Args)…};}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
abstrakt_test.cpp:31:7:注意:因为以下虚拟函数在“派生”中是纯函数:
派生类:公共基
^~~~~~~
abstrakt_test.cpp:29:18:注意:'virtualvoid Base::printarma()'
虚空printarma()=0;
^~~~~~~~~
在/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/numpy.h:12中包含的文件中,
从/usr/local/include/carma/carma/converters.h:24,
from/usr/local/include/carma/carma/arraystore.h:1,
from/usr/local/include/carma/carma.h:1,
来自abstrakt_测试。cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/pybind11.h:void pybind11::cpp_function::initialize(Func&&,Return(*)(Args…,const Extra&…)[带Func=pybind11::cpp_function::cpp_function(Return(Class::*)(Arg…,const Extra&…)[with Return=void;Class=Derived;Arg={pybind11::array_t&};Extra={pybind11::name,pybind11::scope,pybind11::sibling,pybind11::Arg}]:::;Return=void;Args={Derived*,pybind11::array_t&};Extra={pybind11::name,pybind11::scope,pybind11::sibling,pybind11::Arg}]:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/pybind11.h:78:9:从'pybind11::cpp_函数::cpp_函数(Return(Class:*)(Arg…,const Extra&…)[with Return=void;Class=Derived;Arg={pybind11::array_t&};Extra={pybind11::name,pybind11::scope,pybind11::sibling,pybind11::Arg}}]’
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/pybind11.h:819:22:必须来自“pybind11::module&pybind11::module::def(const char*,Func&&,const Extra&…)[with Func=void(派生:*)(pybind11::array_t&);Extra={pybind11::arg}”
abstrakt_测试。cpp:47:55:此处需要
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/pybind11.h:133:50:错误:静态断言失败:参数批注的数量与函数参数的数量不匹配
静态\u断言(预期的\u num\u参数(sizeof…(参数)、cast\u-in::has\u-args、cast\u-in::has\u-kwargs),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
在/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/attr.h:13中包含的文件中,
from/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/pybind11.h:44,
from/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/numpy.h:12,
从/usr/local/include/carma/carma/converters.h:24,
from/usr/local/include/carma/carma/arraystore.h:1,
from/usr/local/include/carma/carma.h:1,
来自abstrakt_测试。cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site packages/pybind11/include/pybind11/cast.h:1958:57:错误:'std::enable_if_pybind11::detail::argument\u loader::call(Func&&&&&&&[with Return=void;Guard=pybind11::detail::void\type;Func=pybind11::cpp_函数::cpp_函数(Return(Class::*)(Arg,const-Extra&…)[with Return=void;Class=Derived;Arg={pybind11::array_t&};Extra={pybind11::name,pybind11::scope,pybind11::sibling,pybind11::Arg}]::::&;Args={Derived*,pybind11::array_t&};std::enable_if_=pybind11::detail::void_类型]'[with Return=void;Class=Derived;Arg={pybind11::array\u t&};Extra={pybind11::name,
In file included from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:47,
                 from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/numpy.h:12,
                 from /usr/local/include/carma/carma/converters.h:24,
                 from /usr/local/include/carma/carma/arraystore.h:1,
                 from /usr/local/include/carma/carma.h:1,
                 from abstrakt_test.cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/detail/init.h: In instantiation of ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = Derived; Args = {}; typename std::enable_if<(! std::is_constructible<_Tp, _Args>::value), int>::type <anonymous> = 0]’:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/detail/init.h:174:66:   required from ‘static void pybind11::detail::initimpl::constructor<Args>::execute(Class&, const Extra& ...) [with Class = pybind11::class_<Derived, Base>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type <anonymous> = 0; Args = {}]’
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:1148:9:   required from ‘pybind11::class_<type_, options>& pybind11::class_<type_, options>::def(const pybind11::detail::initimpl::constructor<Args ...>&, const Extra& ...) [with Args = {}; Extra = {}; type_ = Derived; options = {Base}]’
abstrakt_test.cpp:45:26:   required from here
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/detail/init.h:63:64: error: invalid new-expression of abstract class type ‘Derived’
 inline Class *construct_or_initialize(Args &&...args) { return new Class{std::forward<Args>(args)...}; }
                                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
abstrakt_test.cpp:31:7: note:   because the following virtual functions are pure within ‘Derived’:
 class Derived: public Base
       ^~~~~~~
abstrakt_test.cpp:29:18: note:  ‘virtual void Base::printarma()’
     virtual void printarma() = 0;
                  ^~~~~~~~~
In file included from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/numpy.h:12,
                 from /usr/local/include/carma/carma/converters.h:24,
                 from /usr/local/include/carma/carma/arraystore.h:1,
                 from /usr/local/include/carma/carma.h:1,
                 from abstrakt_test.cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h: In instantiation of ‘void pybind11::cpp_function::initialize(Func&&, Return (*)(Args ...), const Extra& ...) [with Func = pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]::<lambda(Derived*, pybind11::array_t<double>&)>; Return = void; Args = {Derived*, pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]’:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:78:9:   required from ‘pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]’
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:819:22:   required from ‘pybind11::module& pybind11::module::def(const char*, Func&&, const Extra& ...) [with Func = void (Derived::*)(pybind11::array_t<double>&); Extra = {pybind11::arg}]’
abstrakt_test.cpp:47:55:   required from here
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:133:50: error: static assertion failed: The number of argument annotations does not match the number of function arguments
         static_assert(expected_num_args<Extra...>(sizeof...(Args), cast_in::has_args, cast_in::has_kwargs),
                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/attr.h:13,
                 from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/pybind11.h:44,
                 from /home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/numpy.h:12,
                 from /usr/local/include/carma/carma/converters.h:24,
                 from /usr/local/include/carma/carma/arraystore.h:1,
                 from /usr/local/include/carma/carma.h:1,
                 from abstrakt_test.cpp:18:
/home/mikanim/anaconda3/envs/pybind/lib/python3.7/site-packages/pybind11/include/pybind11/cast.h:1958:57: error: ‘std::enable_if_t<std::is_void<_Res>::value, pybind11::detail::void_type> pybind11::detail::argument_loader<Args>::call(Func&&) && [with Return = void; Guard = pybind11::detail::void_type; Func = pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]::<lambda(Derived*, pybind11::array_t<double>&)>&; Args = {Derived*, pybind11::array_t<double, 16>&}; std::enable_if_t<std::is_void<_Res>::value, pybind11::detail::void_type> = pybind11::detail::void_type]’, declared using local type ‘pybind11::cpp_function::cpp_function(Return (Class::*)(Arg ...), const Extra& ...) [with Return = void; Class = Derived; Arg = {pybind11::array_t<double, 16>&}; Extra = {pybind11::name, pybind11::scope, pybind11::sibling, pybind11::arg}]::<lambda(Derived*, pybind11::array_t<double>&)>’, is used but never defined [-fpermissive]
     enable_if_t<std::is_void<Return>::value, void_type> call(Func &&f) && {
c++ -O3 -Wall -shared -std=c++11 -fPIC `python3 -m pybind11 --includes` abstrakt_test.cpp -o example`python3-config --extension-suffix`



#include <ostream>
#include <iostream>
#include <pybind11/pybind11.h>


namespace py = pybind11;
using namespace std;

class Base
{
public:
    virtual void test() = 0;
};
class Derived: public Base
{

public:

    void test() {cout << "Test";}
};

PYBIND11_MODULE(example,m) {
    py::class_<Base>(m, "Base");

    py::class_<Derived, Base>(m, "Derived")
        .def(py::init<>())
        .def("test", &Derived::test);
} 
class Base
{
public:
    virtual void test() = 0;
    virtual void printarma(py::array_t<double> & arr) = 0;
};
class Derived: public Base
{

public:
    void printarma(py::array_t<double> & arr) {arma::Mat<double> mat = carma::arr_to_mat<double>(arr);
            std::cout << mat<< std::endl;}
    void test()  {cout << "Test";}
};


PYBIND11_MODULE(example,m) {
    py::class_<Base>(m, "Base");

    py::class_<Derived, Base>(m, "Derived")
        .def(py::init<>())
        .def("test", &Derived::test)
        .def("printarma", &Derived::printarma,py::arg("arr"));