Python代码中的调用参数
我有以下代码,在调用时需要一个-p参数。但是,如何在SQL查询中调用-p参数?我还希望在输出文件名中使用这个-p参数文本Python代码中的调用参数,python,python-3.x,Python,Python 3.x,我有以下代码,在调用时需要一个-p参数。但是,如何在SQL查询中调用-p参数?我还希望在输出文件名中使用这个-p参数文本 #!/usr/bin/python import argparse import psycopg2 import csv parser = argparse.ArgumentParser(description='insert the project ID as an argument') parser.add_argument('-p','--project_id',
#!/usr/bin/python
import argparse
import psycopg2
import csv
parser = argparse.ArgumentParser(description='insert the project ID as an
argument')
parser.add_argument('-p','--project_id', help='project_id to pull files from
ERAPRO',required=True)
args = parser.parse_args()
conn = psycopg2.connect(database="XXX", user="XXX", password="XXX",
host="XXX", port="5432")
cur = conn.cursor()
cur.execute("""SELECT project_analysis.project_accession,
analysis.analysis_accession, file.filename, file.file_md5, file.file_location
FROM project_analysis
LEFT JOIN analysis on project_analysis.analysis_accession = analysis.analysis_accession
LEFT JOIN analysis_file on analysis.analysis_accession = analysis_file.analysis_accession
LEFT JOIN file on analysis_file.file_id = file.file_id
WHERE project_accession = <INSERT -p ARGUMENT HERE> and analysis.hidden_in_eva = '0';""")
records = cur.fetchall()
with open ('/nfs/production3/eva/user/gary/evapro_ftp/<INSERT -p ARGUMENT
HERE>.csv', 'w') as f:
writer = csv.writer (f, delimiter = ',')
for row in records:
writer.writerow(row)
conn.close()
谢谢你的帮助
谢谢首先使用dest argument将参数指定给变量以添加参数。假设我们将输入分配给project_id变量。 这样我们可以在代码中引用它
parser.add_argument('-p','--project_id',
help='project_id to pull files from
ERAPRO',
required=True,
dest='project_id') # notice the dest argument
cur.execute("""SELECT project_analysis.project_accession,
analysis.analysis_accession, file.filename, file.file_md5, file.file_location
FROM project_analysis
LEFT JOIN analysis on project_analysis.analysis_accession = analysis.analysis_accession
LEFT JOIN analysis_file on analysis.analysis_accession = analysis_file.analysis_accession
LEFT JOIN file on analysis_file.file_id = file.file_id
WHERE project_accession = %s and analysis.hidden_in_eva = '0';""", (args.project_id))
请注意execute'…%的用法s…',args.project_id通过这样做,我们将project_id引用的值插入字符串。调用args=parser.parse_args后,您可以获得如下参数值:
pid=args.project\u id
然后,您可以通过使用普通字符串替换在代码中使用该pid值。但是,最好使用psycopg2的内置方法将参数传递给SQL查询,以防止SQL注入
正常字符串替换:
'hello world {]'.format(var_name)
psycopg2:
cur.execute('SELECT * from %s', (var_name))
我想您希望args.project\u id而不是project\u id作为执行语句的参数。谢谢您的帮助!