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如何在R中聚集热图中的值?_R_Casting_Dataframe_Heatmap_Xtable - Fatal编程技术网

如何在R中聚集热图中的值?

如何在R中聚集热图中的值?,r,casting,dataframe,heatmap,xtable,R,Casting,Dataframe,Heatmap,Xtable,使用以下数据: > mytable<-read.delim("mytable.csv",sep=",",header=T) > class(mytable) [1] "data.frame" > mytable count lang1 lang2 1 908446 ar ar 2 96 ar bg 3 73 ar bo 4

使用以下数据:

    > mytable<-read.delim("mytable.csv",sep=",",header=T)
    > class(mytable)
   [1] "data.frame"
    > mytable

         count lang1 lang2
    1   908446    ar    ar
    2       96    ar    bg
    3       73    ar    bo
    4        2    ar   chr
    5       61    ar    da
    6     1282    ar    de
    7       84    ar    el
    8    28067    ar    en
    9     1178    ar    es
    10     962    ar    et
    11   25945    ar    fa
    12     100    ar    fi
    13     765    ar    fr
    14      18    ar    he
    15       1    ar    hi
    16    1036    ar    ht
    17     267    ar    hu
    18      17    ar    hy
    19    3306    ar    id
    20      23    ar    is
    21     262    ar    it
    22       1    ar    iu
    23     265    ar    ja
    24      46    ar    ka
    25     400    ar    ko
    26      43    ar    lt
    27     160    ar    lv
    28       1    ar    my
    29    1539    ar    nl
    30      28    ar    no
    31  558362    ar  none
    32     507    ar    pl
    33     847    ar    pt
    34     577    ar    ru
    35     369    ar    sk
    36     309    ar    sl
    37     127    ar    sv
    38       1    ar    ta
    39       9    ar    th
    40     911    ar    tl
    41     585    ar    tr
    42       3    ar    uk
    43   46861    ar   und
    44    6499    ar    ur
    45    2245    ar    vi
    46      17    ar    zh
    47      13    ca    ar
    48       1    ca    bg
    49      27    ca    da
    50     100    ca    de
    51     946    ca    en
    52    8840    ca    es
    53      56    ca    et
    54      15    ca    fi
    55     912    ca    fr
    56      97    ca    ht
    57      64    ca    hu
    58      96    ca    id
    59       8    ca    is
    60     556    ca    it
    61      12    ca    ja
    62       2    ca    ko
    63      13    ca    lt
    64      58    ca    lv
    65      47    ca    nl
    66       6    ca    no
    67    7729    ca  none
    68      26    ca    pl
    69    1032    ca    pt
    70      10    ca    ru
    71      62    ca    sk
    72      57    ca    sl
    73      32    ca    sv
    74      93    ca    tl
    75      39    ca    tr
    76     275    ca   und
    77      53    ca    vi
    78      14    cs    ar
    79      33    cs    bg
    80       1    cs    da
    81      64    cs    de
    82    1729    cs    en
    83     162    cs    es
    84      47    cs    et
    85       6    cs    fi
    86      39    cs    fr
    87      27    cs    ht
    88      28    cs    hu
    89      30    cs    id
    90       2    cs    is
    91      30    cs    it
    92       5    cs    ja
    93      12    cs    lt
    94      26    cs    lv
    95      18    cs    nl
    96     790    cs  none
    97      77    cs    pl
    98      86    cs    pt
    99     366    cs    ru
    100   1497    cs    sk
    101     83    cs    sl
    102      2    cs    sv
    103     26    cs    tl
    104     16    cs    tr
    105      1    cs    uk
    106    186    cs   und
    107     60    cs    vi
    108      3    cs    zh
>mytable类(mytable)
[1] “数据帧”
>我的桌子
计数lang1 lang2
1908446 ar
296ArBG
3 73阿宝
4.2 ar-chr
561阿尔达
61282阿尔德
7 84阿雷尔
828067 ar en
9 1178 ar es
10962 ar et
1125945 ar fa
12 100 ar fi
13765 ar fr
14.18何志平
15 1 ar hi
16 1036 ar ht
17267Ar hu
18 17 ar hy
19 3306 ar id
20 23 ar是
21262 ar it
22 1 ar iu
23265 ar ja
2446阿尔卡
25400阿尔科
26 43 ar lt
27 160 ar低压
28.1我的
291539AR荷兰
30 28 ar号
31 558362 ar无
32507Ar pl
33 847 ar pt
34577Ar-ru
35369AR sk
36 309 ar sl
37 127 ar sv
381Ar ta
39日9时
40 911 ar tl
41585 ar tr
42 3 ar uk
4346861美元
44 6499欧元
45 2245 ar vi
46 17 ar zh
4713CA-ar
48 1 ca bg
49 27加拿大
50 100卡德
51946ca-en
528840加利福尼亚州
53 56加拿大东部
54 15 ca-fi
55 912加拿大联邦储备银行
56 97卡热处理
57 64卡胡
58 96 ca id
59 8 ca是
60 556 ca it
61 12卡贾
62 2卡高
63 13钙
64 58 ca lv
65 47加拿大国家图书馆
66 6 ca号
677729无
68 26加利福尼亚州
69 1032钙铂
70 10卡鲁
7162CA sk
72 57卡sl
73 32卡西弗
74 93钙铊
75 39 ca tr
76 275加元
77 53 ca vi
78 14 cs ar
79 33 cs背景
80 1 cs da
81 64 cs de
82 1729 cs en
83 162 cs es
84 47 cs et
85 6 cs fi
86 39 cs fr
87 27 cs ht
88 28 cs胡
89 30 cs id
90 2 cs是
91 30 cs it
92 5 cs ja
93 12 cs lt
94 26 cs lv
95 18 cs nl
96 790 cs无
97 77 cs pl
98 86 cs pt
99 366 cs ru
100 1497 cs sk
101 83 cs sl
102 2 cs sv
103 26 cs tl
104 16 cs tr
105 1 cs英国
106 186加元
107 60 cs vi
108 3 cs zh
我希望在以下解决方案中将类似的计数聚集在一起:

> Xmytable<-xtabs(mytable$count ~ mytable$lang1 + mytable$lang2, mytable)
> heatmap(Xmytable) 
>Xmytable热图(Xmytable)

下面是我的问题:

1。)是否有其他方法操作此数据集以生成基于计数的色域热图?(我想创建一个类似于我展示的热图)

2.)是否可以改进聚类以将相似的颜色分组到彼此相近的位置?

谢谢

你可以试试这个

library(ggplot2)
ggplot(x, aes(x = lang1, y = lang2, fill = count)) + geom_bin2d()

< >添加树状图,考虑这个线程和/或发布另一个问题。 这是迄今为止我发现的最好的选择:

mytable<-read.delim("mytable.csv",sep=",",header=T)
mytable$ln<-log(mytable$count)
mytable#count<-NULL
mytable

"bio","twit","ln"
"ar","ar",13.7194907264167
"ar","bg",4.56434819146784
"ar","bo",4.29045944114839
"ar","chr",0.693147180559945
"ar","da",4.11087386417331
"ar","de",7.15617663748062
"ar","el",4.43081679884331
"ar","en",10.2423497879763
"ar","es",7.07157336421153
"ar","et",6.86901445066571
"ar","fa",10.1637341918018
"ar","fi",4.60517018598809
"ar","fr",6.63987583382654
"ar","he",2.89037175789616
"ar","hi",0
"ar","ht",6.94312242281943
"ar","hu",5.58724865840025
"ar","hy",2.83321334405622
"ar","id",8.10349427838097
"ar","is",3.13549421592915
"ar","it",5.5683445037611
"ar","iu",0
"ar","ja",5.57972982598622
"ar","ka",3.8286413964891
"ar","ko",5.99146454710798
"ar","lt",3.76120011569356
"ar","lv",5.07517381523383
"ar","my",0
"ar","nl",7.33888813383888
"ar","no",3.3322045101752
"ar","NONE",13.2327627765388
"ar","pl",6.22851100359118
"ar","pt",6.74170069465205
"ar","ru",6.3578422665081
"ar","sk",5.91079664404053
"ar","sl",5.73334127689775
"ar","sv",4.84418708645859
"ar","ta",0
"ar","th",2.19722457733622
"ar","tl",6.81454289725996
"ar","tr",6.37161184723186
"ar","uk",1.09861228866811
"ar","und",10.7549410519963
"ar","ur",8.77940359789435
"ar","vi",7.71646080017636
"ar","zh",2.83321334405622
"ca","ar",2.56494935746154
"ca","bg",0
"ca","da",3.29583686600433
"ca","de",4.60517018598809
"ca","en",6.85224256905188
"ca","es",9.08704215563169
"ca","et",4.02535169073515
"ca","fi",2.70805020110221
"ca","fr",6.81563999007433
"ca","ht",4.57471097850338
"ca","hu",4.15888308335967
"ca","id",4.56434819146784
"ca","is",2.07944154167984
"ca","it",6.32076829425058
"ca","ja",2.484906649788
"ca","ko",0.693147180559945
"ca","lt",2.56494935746154
"ca","lv",4.06044301054642
"ca","nl",3.85014760171006
"ca","no",1.79175946922805
"ca","NONE",8.95273476710687
"ca","pl",3.25809653802148
"ca","pt",6.93925394604151
"ca","ru",2.30258509299405
"ca","sk",4.12713438504509
"ca","sl",4.04305126783455
"ca","sv",3.46573590279973
"ca","tl",4.53259949315326
"ca","tr",3.66356164612965
"ca","und",5.61677109766657
"ca","vi",3.97029191355212
"cs","ar",2.63905732961526
"cs","bg",3.49650756146648
"cs","da",0
"cs","de",4.15888308335967
"cs","en",7.45529848568329
"cs","es",5.08759633523238
"cs","et",3.85014760171006
"cs","fi",1.79175946922805
"cs","fr",3.66356164612965
"cs","ht",3.29583686600433
"cs","hu",3.3322045101752
"cs","id",3.40119738166216
"cs","is",0.693147180559945
"cs","it",3.40119738166216
"cs","ja",1.6094379124341
"cs","lt",2.484906649788
"cs","lv",3.25809653802148
"cs","nl",2.89037175789616
"cs","NONE",6.67203294546107
"cs","pl",4.34380542185368
"cs","pt",4.45434729625351
"cs","ru",5.90263333340137
"cs","sk",7.31121838441963
"cs","sl",4.4188406077966
"cs","sv",0.693147180559945
"cs","tl",3.25809653802148
"cs","tr",2.77258872223978
"cs","uk",0
"cs","und",5.2257466737132
"cs","vi",4.0943445622221
"cs","zh",1.09861228866811


Xmytable<-xtabs(mytable$ln ~ mytable$lang1 + mytable$lang2, mytable)
library(pheatmap)
pheatmap(Xmytable, cluster_rows=T)


MyTable这将是一个奇怪的热图,3个单元格的高度/宽度?谢谢链接,我的朋友!希望这个链接能够更好地理解我在下面发布的集群问题。geom_bin2d是一个相当弱的热图形式,因为它为零的任何值留下空白,并且没有聚类,但它肯定是朝着正确方向迈出的一步!非常感谢。