Apache Zookeeper错误连接丢失异常
我正在AmazonEC2实例上运行SeqWare虚拟机,我试图使用SeqWare查询引擎从VCF文件中查询数据。当我第一次启动实例并按照说明导入数据时,它工作正常,并继续工作,直到我停止实例。当我重新启动它时。它不允许我导入任何内容,也不允许创建新的工作区。它总是返回下面的错误。我查看了这些进程,发现所有必需的节点都没有运行,所以我登录到root并转到Apache Zookeeper错误连接丢失异常,apache,hadoop,mapreduce,hbase,apache-zookeeper,Apache,Hadoop,Mapreduce,Hbase,Apache Zookeeper,我正在AmazonEC2实例上运行SeqWare虚拟机,我试图使用SeqWare查询引擎从VCF文件中查询数据。当我第一次启动实例并按照说明导入数据时,它工作正常,并继续工作,直到我停止实例。当我重新启动它时。它不允许我导入任何内容,也不允许创建新的工作区。它总是返回下面的错误。我查看了这些进程,发现所有必需的节点都没有运行,所以我登录到root并转到etc/init.d目录,然后再次启动所有程序,在这一点上,当我不尝试导入数据时,我甚至没有收到错误,我必须停止进程 [seqware@maste
etc/init.d
目录,然后再次启动所有程序,在这一点上,当我不尝试导入数据时,我甚至没有收到错误,我必须停止进程
[seqware@master target]$ java -classpath seqware-distribution-0.13.6.7-qe-full.jar com.github.seqware.queryengine.system.importers.SOFeatureImporter -i ../../seqware-queryengine/src/test/resources/com/github/seqware/queryengine/system/FeatureImporter/consequences_annotated.vcf ALL.chr3.phase1_release_v3.20101123.snps_indels_svs.genotypes.3_100001-101000.vcf -o keyValueVCF.out -r hg_19 -s c111aea5-5e18-4c62-a8a7-ec82fe151301 -a ad_hoc -w VCFVariantImportWorker
[SeqWare Query Engine] 0 [main] ERROR org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper - ZooKeeper exists failed after 3 retries
[SeqWare Query Engine] 1 [main] ERROR org.apache.hadoop.hbase.zookeeper.ZooKeeperWatcher - hconnection Received unexpected KeeperException, re-throwing exception
org.apache.zookeeper.KeeperException$ConnectionLossException: KeeperErrorCode = ConnectionLoss for /hbase/master
at org.apache.zookeeper.KeeperException.create(KeeperException.java:99)
at org.apache.zookeeper.KeeperException.create(KeeperException.java:51)
at org.apache.zookeeper.ZooKeeper.exists(ZooKeeper.java:1021)
at org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.exists(RecoverableZooKeeper.java:154)
at org.apache.hadoop.hbase.zookeeper.ZKUtil.watchAndCheckExists(ZKUtil.java:226)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperNodeTracker.start(ZooKeeperNodeTracker.java:82)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.setupZookeeperTrackers(HConnectionManager.java:580)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.<init>(HConnectionManager.java:569)
at org.apache.hadoop.hbase.client.HConnectionManager.getConnection(HConnectionManager.java:186)
at org.apache.hadoop.hbase.client.HBaseAdmin.<init>(HBaseAdmin.java:100)
at com.github.seqware.queryengine.impl.HBaseStorage.<init>(HBaseStorage.java:89)
at com.github.seqware.queryengine.factory.SWQEFactory$Storage_Type$3.buildStorage(SWQEFactory.java:109)
at com.github.seqware.queryengine.factory.SWQEFactory.getStorage(SWQEFactory.java:174)
at com.github.seqware.queryengine.factory.SWQEFactory.getQueryInterface(SWQEFactory.java:199)
at com.github.seqware.queryengine.impl.SimpleModelManager.<init>(SimpleModelManager.java:49)
at com.github.seqware.queryengine.impl.HBaseModelManager.<init>(HBaseModelManager.java:36)
at com.github.seqware.queryengine.impl.MRHBaseModelManager.<init>(MRHBaseModelManager.java:32)
at com.github.seqware.queryengine.factory.SWQEFactory.getModelManager(SWQEFactory.java:211)
at com.github.seqware.queryengine.system.importers.FeatureImporter.performImport(FeatureImporter.java:66)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.runMain(SOFeatureImporter.java:141)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.main(SOFeatureImporter.java:60)
[SeqWare Query Engine] 3 [main] FATAL org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation - Unexpected exception during initialization, aborting
org.apache.zookeeper.KeeperException$ConnectionLossException: KeeperErrorCode = ConnectionLoss for /hbase/master
at org.apache.zookeeper.KeeperException.create(KeeperException.java:99)
at org.apache.zookeeper.KeeperException.create(KeeperException.java:51)
at org.apache.zookeeper.ZooKeeper.exists(ZooKeeper.java:1021)
at org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.exists(RecoverableZooKeeper.java:154)
at org.apache.hadoop.hbase.zookeeper.ZKUtil.watchAndCheckExists(ZKUtil.java:226)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperNodeTracker.start(ZooKeeperNodeTracker.java:82)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.setupZookeeperTrackers(HConnectionManager.java:580)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.<init>(HConnectionManager.java:569)
at org.apache.hadoop.hbase.client.HConnectionManager.getConnection(HConnectionManager.java:186)
at org.apache.hadoop.hbase.client.HBaseAdmin.<init>(HBaseAdmin.java:100)
at com.github.seqware.queryengine.impl.HBaseStorage.<init>(HBaseStorage.java:89)
at com.github.seqware.queryengine.factory.SWQEFactory$Storage_Type$3.buildStorage(SWQEFactory.java:109)
at com.github.seqware.queryengine.factory.SWQEFactory.getStorage(SWQEFactory.java:174)
at com.github.seqware.queryengine.factory.SWQEFactory.getQueryInterface(SWQEFactory.java:199)
at com.github.seqware.queryengine.impl.SimpleModelManager.<init>(SimpleModelManager.java:49)
at com.github.seqware.queryengine.impl.HBaseModelManager.<init>(HBaseModelManager.java:36)
at com.github.seqware.queryengine.impl.MRHBaseModelManager.<init>(MRHBaseModelManager.java:32)
at com.github.seqware.queryengine.factory.SWQEFactory.getModelManager(SWQEFactory.java:211)
at com.github.seqware.queryengine.system.importers.FeatureImporter.performImport(FeatureImporter.java:66)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.runMain(SOFeatureImporter.java:141)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.main(SOFeatureImporter.java:60)
[seqware@master[目标]$java-classpath seqware-distribution-0.13.6.7-qe-full.jar com.github.seqware.queryengine.system.importers.SOFeatureImporter-i../。/seqware-queryengine/src/test/resources/com/github/seqware/queryengine/system/FeatureImporter/consultures\u annotated.vcf ALL.chr3.phase1\u发布版\u v3.20101123.snps\u indels\u svs.geneties.3\u 100001-101000.vcf-okeyValueVCF.out-r hg_19-s c111aea5-5e18-4c62-a8a7-ec82fe151301-一名临时VCF进口工人
[SeqWare查询引擎]0[main]错误org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper-zookeeper存在重试3次失败
[SeqWare查询引擎]1[main]错误org.apache.hadoop.hbase.zookeeper.zookeeper-watcher-hconnection收到意外的KeeperException,重新引发异常
org.apache.zookeeper.KeeperException$ConnectionLossException:KeeperErrorCode=ConnectionLoss for/hbase/master
在org.apache.zookeeper.keeprexception.create上(keeprexception.java:99)
在org.apache.zookeeper.keeprexception.create上(keeprexception.java:51)
位于org.apache.zookeeper.zookeeper.exists(zookeeper.java:1021)
位于org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.exists(RecoverableZooKeeper.java:154)
位于org.apache.hadoop.hbase.zookeeper.ZKUtil.watchAndCheckExists(ZKUtil.java:226)
位于org.apache.hadoop.hbase.zookeeper.ZooKeeperNodeTracker.start(ZooKeeperNodeTracker.java:82)
位于org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.setupZookeeperTrackers(HConnectionManager.java:580)
位于org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.(HConnectionManager.java:569)
位于org.apache.hadoop.hbase.client.HConnectionManager.getConnection(HConnectionManager.java:186)
位于org.apache.hadoop.hbase.client.HBaseAdmin.(HBaseAdmin.java:100)
位于com.github.seqware.queryengine.impl.hbastorage。(hbastorage.java:89)
位于com.github.seqware.queryengine.factory.SWQEFactory$Storage\u Type$3.buildStorage(SWQEFactory.java:109)
位于com.github.seqware.queryengine.factory.SWQEFactory.getStorage(SWQEFactory.java:174)
位于com.github.seqware.queryengine.factory.SWQEFactory.getQueryInterface(SWQEFactory.java:199)
位于com.github.seqware.queryengine.impl.SimpleModelManager。(SimpleModelManager.java:49)
位于com.github.seqware.queryengine.impl.HBaseModelManager。(HBaseModelManager.java:36)
位于com.github.seqware.queryengine.impl.MRHBaseModelManager。(MRHBaseModelManager.java:32)
位于com.github.seqware.queryengine.factory.SWQEFactory.getModelManager(SWQEFactory.java:211)
位于com.github.seqware.queryengine.system.importers.FeatureImporter.performImport(FeatureImporter.java:66)
位于com.github.seqware.queryengine.system.importers.SOFeatureImporter.runMain(SOFeatureImporter.java:141)
位于com.github.seqware.queryengine.system.importers.SOFeatureImporter.main(SOFeatureImporter.java:60)
[SeqWare查询引擎]3[main]致命org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation-初始化期间出现意外异常,正在中止
org.apache.zookeeper.KeeperException$ConnectionLossException:KeeperErrorCode=ConnectionLoss for/hbase/master
在org.apache.zookeeper.keeprexception.create上(keeprexception.java:99)
在org.apache.zookeeper.keeprexception.create上(keeprexception.java:51)
位于org.apache.zookeeper.zookeeper.exists(zookeeper.java:1021)
位于org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.exists(RecoverableZooKeeper.java:154)
位于org.apache.hadoop.hbase.zookeeper.ZKUtil.watchAndCheckExists(ZKUtil.java:226)
位于org.apache.hadoop.hbase.zookeeper.ZooKeeperNodeTracker.start(ZooKeeperNodeTracker.java:82)
位于org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.setupZookeeperTrackers(HConnectionManager.java:580)
位于org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.(HConnectionManager.java:569)
位于org.apache.hadoop.hbase.client.HConnectionManager.getConnection(HConnectionManager.java:186)
位于org.apache.hadoop.hbase.client.HBaseAdmin.(HBaseAdmin.java:100)
位于com.github.seqware.queryengine.impl.hbastorage。(hbastorage.java:89)
位于com.github.seqware.queryengine.factory.SWQEFactory$Storage\u Type$3.buildStorage(SWQEFactory.java:109)
位于com.github.seqware.queryengine.factory.SWQEFactory.getStorage(SWQEFactory.java:174)
位于com.github.seqware.queryengine.factory.SWQEFactory.getQueryInterface(SWQEFactory.java:199)
位于com.github.seqware.queryengine.impl.SimpleModelManager。(SimpleModelManager.java:49)
位于com.github.seqware.queryengine.impl.HBaseModelManager。(HBaseModelManager.java:36)
位于com.github.seqware.queryengine.impl.MRHBaseModelManager。(MRHBaseModelManager.java:32)
位于com.github.seqware.queryengine.factory.SWQEFactory.getModelManager(SWQEFactory.java:211)
位于com.github.seqware.queryengine.system.importers.FeatureImporter.performImport(FeatureImporter.java:66)
位于com.github.seqware.queryengine.system.importers.SOFeatureImporter.runMain(SOFeatureImporter.java:141)
请访问com.github.seqware.queryengine.system.importers.S