由于驱动程序和数据库之间缺少连接,Pyspark JDBC到PostgreSQL的连接失败
我们在EMR集群上使用Pyspark来访问和分析PostgreSQL数据库中的数据(可通过JDBC连接器访问由于驱动程序和数据库之间缺少连接,Pyspark JDBC到PostgreSQL的连接失败,postgresql,apache-spark,jdbc,pyspark,Postgresql,Apache Spark,Jdbc,Pyspark,我们在EMR集群上使用Pyspark来访问和分析PostgreSQL数据库中的数据(可通过JDBC连接器访问JDBC:postgresql://psqlhost:5432/psqldatabase)。EMR集群和PostgreSQL实例之间的网络是开放的,因此,当我们通过SSH访问EMR主机时,我们可以成功启动以下作业(在客户端和集群部署模式下): 我们现在想在EMR集群上更改设置并执行Pyspark命令,该命令来自一个与EMR集群完全连接的独立客户端实例。通过将必要的纱线配置文件复制到客户机,
JDBC:postgresql://psqlhost:5432/psqldatabase
)。EMR集群和PostgreSQL实例之间的网络是开放的,因此,当我们通过SSH访问EMR主机时,我们可以成功启动以下作业(在客户端和集群部署模式下):
我们现在想在EMR集群上更改设置并执行Pyspark命令,该命令来自一个与EMR集群完全连接的独立客户端实例。通过将必要的纱线配置文件复制到客户机,并使用--master warn
执行Pyspark,已成功设置了该功能
但是,我们在从客户端实例访问PostgreSQL数据库时仍然遇到问题。出于安全原因,客户端计算机无法访问PostgreSQL实例,但EMR集群仍然可以访问该实例。上面的代码片段在--deploy mode cluster
中正常工作。但是,在--deploy mode client
中工作时,最后一行产生以下错误:
17/03/27 11:39:21 ERROR Driver: Connection error:
org.postgresql.util.PSQLException: The connection attempt failed.
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:275)
at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49)
at org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:194)
at org.postgresql.Driver.makeConnection(Driver.java:431)
at org.postgresql.Driver.connect(Driver.java:247)
at org.apache.spark.sql.execution.datasources.jdbc.DriverWrapper.connect(DriverWrapper.scala:45)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:65)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:56)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:123)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:117)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:237)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:159)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:280)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:128)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:211)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at org.postgresql.core.PGStream.<init>(PGStream.java:62)
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:144)
... 22 more
---------------------------------------------------------------------------
Py4JJavaError Traceback (most recent call last)
<ipython-input-2-f5f370f4d567> in <module>()
----> 1 products_df = spark.read.jdbc(url=url, table=table, properties=properties)
/opt/spark-2.0.0/python/pyspark/sql/readwriter.pyc in jdbc(self, url, table, column, lowerBound, upperBound, numPartitions, predicates, properties)
420 jpredicates = utils.toJArray(gateway, gateway.jvm.java.lang.String, predicates)
421 return self._df(self._jreader.jdbc(url, table, jpredicates, jprop))
--> 422 return self._df(self._jreader.jdbc(url, table, jprop))
423
424
/opt/spark-2.0.0/python/lib/py4j-0.10.1-src.zip/py4j/java_gateway.py in __call__(self, *args)
931 answer = self.gateway_client.send_command(command)
932 return_value = get_return_value(
--> 933 answer, self.gateway_client, self.target_id, self.name)
934
935 for temp_arg in temp_args:
/opt/spark-2.0.0/python/pyspark/sql/utils.pyc in deco(*a, **kw)
61 def deco(*a, **kw):
62 try:
---> 63 return f(*a, **kw)
64 except py4j.protocol.Py4JJavaError as e:
65 s = e.java_exception.toString()
/opt/spark-2.0.0/python/lib/py4j-0.10.1-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
310 raise Py4JJavaError(
311 "An error occurred while calling {0}{1}{2}.\n".
--> 312 format(target_id, ".", name), value)
313 else:
314 raise Py4JError(
Py4JJavaError: An error occurred while calling o47.jdbc.
: org.postgresql.util.PSQLException: The connection attempt failed.
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:275)
at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49)
at org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:194)
at org.postgresql.Driver.makeConnection(Driver.java:431)
at org.postgresql.Driver.connect(Driver.java:247)
at org.apache.spark.sql.execution.datasources.jdbc.DriverWrapper.connect(DriverWrapper.scala:45)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:65)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:56)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:123)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:117)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:237)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:159)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:280)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:128)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:211)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at org.postgresql.core.PGStream.<init>(PGStream.java:62)
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:144)
... 22 more
17/03/27 11:39:21错误驱动程序:连接错误:
org.postgresql.util.PSQLException:连接尝试失败。
位于org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:275)
位于org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49)
位于org.postgresql.jdbc.PgConnection.(PgConnection.java:194)
位于org.postgresql.Driver.makeConnection(Driver.java:431)
位于org.postgresql.Driver.connect(Driver.java:247)
位于org.apache.spark.sql.execution.datasources.jdbc.DriverWrapper.connect(DriverWrapper.scala:45)
位于org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:65)
位于org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:56)
位于org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:123)
位于org.apache.spark.sql.execution.datasources.jdbc.jdbcreation.(jdbcreation.scala:117)
位于org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:237)
位于org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:159)
在sun.reflect.NativeMethodAccessorImpl.invoke0(本机方法)处
位于sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
在sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)中
位于java.lang.reflect.Method.invoke(Method.java:498)
位于py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237)
位于py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
在py4j.Gateway.invoke处(Gateway.java:280)
位于py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:128)
在py4j.commands.CallCommand.execute(CallCommand.java:79)
在py4j.GatewayConnection.run处(GatewayConnection.java:211)
运行(Thread.java:745)
原因:java.net.SocketTimeoutException:连接超时
位于java.net.PlainSocketImpl.socketConnect(本机方法)
位于java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
位于java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
位于java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
位于java.net.socksocketimpl.connect(socksocketimpl.java:392)
位于java.net.Socket.connect(Socket.java:589)
位于org.postgresql.core.PGStream(PGStream.java:62)
位于org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:144)
... 还有22个
---------------------------------------------------------------------------
Py4JJavaError回溯(最近一次调用)
在()
---->1 products_df=spark.read.jdbc(url=url,table=table,properties=properties)
/jdbc中的opt/spark-2.0.0/python/pyspark/sql/readwriter.pyc(self、url、表、列、lowerBound、上限、numPartitions、谓词、属性)
420 jpredicates=utils.toJArray(网关,gateway.jvm.java.lang.String,谓词)
421返回self.\u df(self.\u jreader.jdbc(url,table,jpredicates,jprop))
-->422返回self.\u df(self.\u jreader.jdbc(url,table,jprop))
423
424
/opt/spark-2.0.0/python/lib/py4j-0.10.1-src.zip/py4j/java_gateway.py in____调用(self,*args)
931 answer=self.gateway\u client.send\u命令(command)
932返回值=获取返回值(
-->933应答,self.gateway_客户端,self.target_id,self.name)
934
935对于临时参数中的临时参数:
/装饰中的opt/spark-2.0.0/python/pyspark/sql/utils.pyc(*a,**kw)
61 def装饰(*a,**千瓦):
62尝试:
--->63返回f(*a,**kw)
64除py4j.protocol.Py4JJavaError外的其他错误为e:
65 s=e.java_exception.toString()
/get_return_value中的opt/spark-2.0.0/python/lib/py4j-0.10.1-src.zip/py4j/protocol.py(答案、网关_客户端、目标_id、名称)
310 raise Py4JJavaError(
311“调用{0}{1}{2}时出错。\n”。
-->312格式(目标id,“.”,名称),值)
313其他:
314升起Py4JError(
Py4JJavaError:调用o47.jdbc时出错。
:org.postgresql.util.PSQLException:连接尝试失败。
位于org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:275)
位于org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49)
位于org.postgresql.jdbc.PgConnection.(PgConnection.java:194)
位于org.postgresql.Driver.makeConnection(Driver.java:431)
位于org.postgresql.Driver.connect(Driver.java:24
17/03/27 11:39:21 ERROR Driver: Connection error:
org.postgresql.util.PSQLException: The connection attempt failed.
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:275)
at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49)
at org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:194)
at org.postgresql.Driver.makeConnection(Driver.java:431)
at org.postgresql.Driver.connect(Driver.java:247)
at org.apache.spark.sql.execution.datasources.jdbc.DriverWrapper.connect(DriverWrapper.scala:45)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:65)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:56)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:123)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:117)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:237)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:159)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:280)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:128)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:211)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at org.postgresql.core.PGStream.<init>(PGStream.java:62)
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:144)
... 22 more
---------------------------------------------------------------------------
Py4JJavaError Traceback (most recent call last)
<ipython-input-2-f5f370f4d567> in <module>()
----> 1 products_df = spark.read.jdbc(url=url, table=table, properties=properties)
/opt/spark-2.0.0/python/pyspark/sql/readwriter.pyc in jdbc(self, url, table, column, lowerBound, upperBound, numPartitions, predicates, properties)
420 jpredicates = utils.toJArray(gateway, gateway.jvm.java.lang.String, predicates)
421 return self._df(self._jreader.jdbc(url, table, jpredicates, jprop))
--> 422 return self._df(self._jreader.jdbc(url, table, jprop))
423
424
/opt/spark-2.0.0/python/lib/py4j-0.10.1-src.zip/py4j/java_gateway.py in __call__(self, *args)
931 answer = self.gateway_client.send_command(command)
932 return_value = get_return_value(
--> 933 answer, self.gateway_client, self.target_id, self.name)
934
935 for temp_arg in temp_args:
/opt/spark-2.0.0/python/pyspark/sql/utils.pyc in deco(*a, **kw)
61 def deco(*a, **kw):
62 try:
---> 63 return f(*a, **kw)
64 except py4j.protocol.Py4JJavaError as e:
65 s = e.java_exception.toString()
/opt/spark-2.0.0/python/lib/py4j-0.10.1-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
310 raise Py4JJavaError(
311 "An error occurred while calling {0}{1}{2}.\n".
--> 312 format(target_id, ".", name), value)
313 else:
314 raise Py4JError(
Py4JJavaError: An error occurred while calling o47.jdbc.
: org.postgresql.util.PSQLException: The connection attempt failed.
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:275)
at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49)
at org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:194)
at org.postgresql.Driver.makeConnection(Driver.java:431)
at org.postgresql.Driver.connect(Driver.java:247)
at org.apache.spark.sql.execution.datasources.jdbc.DriverWrapper.connect(DriverWrapper.scala:45)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:65)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$2.apply(JdbcUtils.scala:56)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:123)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:117)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:237)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:159)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:280)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:128)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:211)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at org.postgresql.core.PGStream.<init>(PGStream.java:62)
at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:144)
... 22 more
from sshtunnel import SSHTunnelForwarder
url = 'jdbc:postgresql://localhost:5432,psqlhost:5432/psqldatabase'
table = 'mytable'
properties = {
'user': 'user',
'password': 'password',
'driver': 'org.postgresql.Driver'
}
with SSHTunnelForwarder(
('emrhost', 22),
remote_bind_address=('psqlhost', 5432),
local_bind_address=('localhost', 5432)
):
products_df = spark.read.jdbc(url=url, table=table, properties=properties)