Python 在Ubuntu 14.04 LTS上安装PLASMA失败

我正在尝试在我的机器上安装PLASMA，它似乎工作顺利，但失败了

我还试图在中发布错误，但是它未被批准，我不确定该站点是否仍然处于活动状态

我的最终目标是安装HiPLARM R软件包，因此我遵循他们发布在上的说明（使用OpenBLAS）

以下是我采取的步骤：

从这里下载PLASMA安装程序：到我的~/Downloads目录（撰写本文时版本2.7.1，由于2-link限制，我必须断开链接）

运行

tar-xf plasma-installer_2.7.1.tar.gz

以便将其提取到~/plasma-installer_2.7.1.tar.gz

在~/plasma-installer_2.7.1.tar.gz文件夹中，运行以下命令（按照HiPLARM网站的说明）：

/setup.py--prefix=“/usr”--blaslib=“-L/usr/lib-lopenblas”\
--cflags=“-O3-fPIC-I/usr/include”\
--fflags=“-O3-fPIC”--noopt=“-fPIC”--downlapc\
--notesting--ldflags_c=“-I/usr/include”

不幸的是，这是我所能做的，因为它失败了

以下是输出：

~/plasma-installer_2.7.1$ ./setup.py --prefix="/usr" --blaslib="-L/usr/lib -lopenblas" \
> --cflags="-O3 -fPIC -I/usr/include" \
> --fflags="-O3 -fPIC" --noopt="-fPIC" --downlapc \
> --notesting --ldflags_c="-I/usr/include" 
========================================
Setting up the framework

NOOPT flags are  -fPIC
Install directory is... /usr
Creating directory /home/erol/plasma-installer_2.7.1/build
Build directory is... /home/erol/plasma-installer_2.7.1/build
Checking if cc works... yes
Checking if the Fortran compiler works... yes
Setting Fortran mangling... -DADD_
Setting download command...
Checking availablility of wget... available
Testing wget... working
Setting ranlib command... /usr/bin/ranlib
Detecting Fortran compiler... GNU
Detecting C compiler... GNU
Selected C compiler flags: -O3 -fPIC -I/usr/include
Selected Fortran compiler flags: -O3 -fPIC
Selected loader flags (C main): -I/usr/include
Selected loader flags (Fortran main): -I/usr/include
Checking loader... works
The C compiler is...  cc
C flags are...  -O3 -fPIC -I/usr/include
The Fortran compiler is...  gfortran
Fortran flags are...  -O3 -fPIC
Ar flags are...  rc
BLAS library is...  -L/usr/lib -lopenblas 
CBLAS library is... Check if included in Blas Library
LAPACK library is... Check if included in Blas library
LAPACK C Interface library is... REFERENCE LAPACKE INTERFACE ( To download )

========================================
  LAPACK C interface installation/verification
========================================

The reference LAPACK C interface is being installed.

Downloading reference LAPACK C interface... Creating directory /home/erol/plasma-installer_2.7.1/build/download
done
Unzip and untar reference LAPACK C interface... done
Compile and generate reference LAPACK C interface... Installation of reference LAPACK C interface successful.
(log is in  /home/erol/plasma-installer_2.7.1/build/log/lapackcwrapperlog )
Traceback (most recent call last):
  File "./setup.py", line 70, in <module>
    sys.exit(main(sys.argv))
  File "./setup.py", line 63, in main
    Lapcwrapper(config, plasma)
  File "/home/erol/plasma-installer_2.7.1/script/lapcwrapper.py", line 42, in __init__
    self.down_install_lapc()
  File "/home/erol/plasma-installer_2.7.1/script/lapcwrapper.py", line 268, in down_install_lapc
    shutil.copy('liblapacke.a',os.path.join(self.prefix,'lib/liblapacke.a'))
  File "/usr/lib/python2.7/shutil.py", line 119, in copy
    copyfile(src, dst)
  File "/usr/lib/python2.7/shutil.py", line 83, in copyfile
    with open(dst, 'wb') as fdst:
IOError: [Errno 13] Permission denied: '/usr/lib/liblapacke.a'

任何关于如何成功安装的反馈都将不胜感激

---

谢谢您的帮助。

这是LAPACK库中的权限错误。以

sudo

的身份运行脚本应该可以解决此问题

( cd INSTALL; make; ./testlsame; ./testslamch; ./testdlamch; \
    ./testsecond; ./testdsecnd; ./testieee; ./testversion )
make[1]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/INSTALL'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/INSTALL'
  ASCII character set
  Tests completed
  Epsilon                      =    5.96046448E-08
  Safe minimum                 =    1.17549435E-38
  Base                         =    2.00000000    
  Precision                    =    1.19209290E-07
  Number of digits in mantissa =    24.0000000    
  Rounding mode                =    1.00000000    
  Minimum exponent             =   -125.000000    
  Underflow threshold          =    1.17549435E-38
  Largest exponent             =    128.000000    
  Overflow threshold           =    3.40282347E+38
  Reciprocal of safe minimum   =    8.50705917E+37
  Epsilon                      =    1.1102230246251565E-016
  Safe minimum                 =    2.2250738585072014E-308
  Base                         =    2.0000000000000000     
  Precision                    =    2.2204460492503131E-016
  Number of digits in mantissa =    53.000000000000000     
  Rounding mode                =    1.0000000000000000     
  Minimum exponent             =   -1021.0000000000000     
  Underflow threshold          =    2.2250738585072014E-308
  Largest exponent             =    1024.0000000000000     
  Overflow threshold           =    1.7976931348623157E+308
  Reciprocal of safe minimum   =    4.4942328371557898E+307
 Time for  0.100E+09 SAXPY ops =  0.785E-02 seconds
 SAXPY performance rate        =  0.127E+05 mflops 
 Including SECOND, time        =  0.163E-01 seconds
 Average time for SECOND       =  0.169E-03 milliseconds
 Equivalent floating point ops =  0.216E+04 ops
 Time for  0.100E+09 DAXPY ops =  0.139E-01 seconds
 DAXPY performance rate        =  0.721E+04 mflops 
 Including DSECND, time        =  0.230E-01 seconds
 Average time for DSECND       =  0.182E-03 milliseconds
 Equivalent floating point ops =  0.132E+04 ops
 We are about to check whether infinity arithmetic
 can be trusted.  If this test hangs, set
 ILAENV = 0 for ISPEC = 10 in LAPACK/SRC/ilaenv.f

 Infinity arithmetic performed as per the ieee spec.
 However, this is not an exhaustive test and does not
 guarantee that infinity arithmetic meets the ieee spec.

 We are about to check whether NaN arithmetic
 can be trusted.  If this test hangs, set
 ILAENV = 0 for ISPEC = 11 in LAPACK/SRC/ilaenv.f

 NaN arithmetic performed as per the ieee spec.
 However, this is not an exhaustive test and does not
 guarantee that NaN arithmetic meets the ieee spec.

 LAPACK            3 .           5 .           0
( cd SRC; make )
make[1]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/SRC'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/SRC'
( cd lapacke; make )
make[1]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke'
cd include && cp lapacke_mangling_with_flags.h lapacke_mangling.h
cd src && make
make[2]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/src'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/src'
cd utils && make
make[2]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/utils'
ar rc ../../liblapacke.a lapacke_cgb_nancheck.o lapacke_cgb_trans.o lapacke_cge_nancheck.o lapacke_cge_trans.o lapacke_cgg_nancheck.o lapacke_cgg_trans.o lapacke_cgt_nancheck.o lapacke_chb_nancheck.o lapacke_chb_trans.o lapacke_che_nancheck.o lapacke_che_trans.o lapacke_chp_nancheck.o lapacke_chp_trans.o lapacke_chs_nancheck.o lapacke_chs_trans.o lapacke_c_nancheck.o lapacke_cpb_nancheck.o lapacke_cpb_trans.o lapacke_cpf_nancheck.o lapacke_cpf_trans.o lapacke_cpo_nancheck.o lapacke_cpo_trans.o lapacke_cpp_nancheck.o lapacke_cpp_trans.o lapacke_cpt_nancheck.o lapacke_csp_nancheck.o lapacke_csp_trans.o lapacke_cst_nancheck.o lapacke_csy_nancheck.o lapacke_csy_trans.o lapacke_ctb_nancheck.o lapacke_ctb_trans.o lapacke_ctf_nancheck.o lapacke_ctf_trans.o lapacke_ctp_nancheck.o lapacke_ctp_trans.o lapacke_ctr_nancheck.o lapacke_ctr_trans.o lapacke_dgb_nancheck.o lapacke_dgb_trans.o lapacke_dge_nancheck.o lapacke_dge_trans.o lapacke_dgg_nancheck.o lapacke_dgg_trans.o lapacke_dgt_nancheck.o lapacke_dhs_nancheck.o lapacke_dhs_trans.o lapacke_d_nancheck.o lapacke_dpb_nancheck.o lapacke_dpb_trans.o lapacke_dpf_nancheck.o lapacke_dpf_trans.o lapacke_dpo_nancheck.o lapacke_dpo_trans.o lapacke_dpp_nancheck.o lapacke_dpp_trans.o lapacke_dpt_nancheck.o lapacke_dsb_nancheck.o lapacke_dsb_trans.o lapacke_dsp_nancheck.o lapacke_dsp_trans.o lapacke_dst_nancheck.o lapacke_dsy_nancheck.o lapacke_dsy_trans.o lapacke_dtb_nancheck.o lapacke_dtb_trans.o lapacke_dtf_nancheck.o lapacke_dtf_trans.o lapacke_dtp_nancheck.o lapacke_dtp_trans.o lapacke_dtr_nancheck.o lapacke_dtr_trans.o lapacke_lsame.o lapacke_sgb_nancheck.o lapacke_sgb_trans.o lapacke_sge_nancheck.o lapacke_sge_trans.o lapacke_sgg_nancheck.o lapacke_sgg_trans.o lapacke_sgt_nancheck.o lapacke_shs_nancheck.o lapacke_shs_trans.o lapacke_s_nancheck.o lapacke_spb_nancheck.o lapacke_spb_trans.o lapacke_spf_nancheck.o lapacke_spf_trans.o lapacke_spo_nancheck.o lapacke_spo_trans.o lapacke_spp_nancheck.o lapacke_spp_trans.o lapacke_spt_nancheck.o lapacke_ssb_nancheck.o lapacke_ssb_trans.o lapacke_ssp_nancheck.o lapacke_ssp_trans.o lapacke_sst_nancheck.o lapacke_ssy_nancheck.o lapacke_ssy_trans.o lapacke_stb_nancheck.o lapacke_stb_trans.o lapacke_stf_nancheck.o lapacke_stf_trans.o lapacke_stp_nancheck.o lapacke_stp_trans.o lapacke_str_nancheck.o lapacke_str_trans.o lapacke_xerbla.o lapacke_zgb_nancheck.o lapacke_zgb_trans.o lapacke_zge_nancheck.o lapacke_zge_trans.o lapacke_zgg_nancheck.o lapacke_zgg_trans.o lapacke_zgt_nancheck.o lapacke_zhb_nancheck.o lapacke_zhb_trans.o lapacke_zhe_nancheck.o lapacke_zhe_trans.o lapacke_zhp_nancheck.o lapacke_zhp_trans.o lapacke_zhs_nancheck.o lapacke_zhs_trans.o lapacke_z_nancheck.o lapacke_zpb_nancheck.o lapacke_zpb_trans.o lapacke_zpf_nancheck.o lapacke_zpf_trans.o lapacke_zpo_nancheck.o lapacke_zpo_trans.o lapacke_zpp_nancheck.o lapacke_zpp_trans.o lapacke_zpt_nancheck.o lapacke_zsp_nancheck.o lapacke_zsp_trans.o lapacke_zst_nancheck.o lapacke_zsy_nancheck.o lapacke_zsy_trans.o lapacke_ztb_nancheck.o lapacke_ztb_trans.o lapacke_ztf_nancheck.o lapacke_ztf_trans.o lapacke_ztp_nancheck.o lapacke_ztp_trans.o lapacke_ztr_nancheck.o lapacke_ztr_trans.o lapacke_make_complex_float.o lapacke_make_complex_double.o
/usr/bin/ranlib ../../liblapacke.a
make[2]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/utils'
make[1]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke'
( cd INSTALL; make; ./testlsame; ./testslamch; ./testdlamch; \
    ./testsecond; ./testdsecnd; ./testieee; ./testversion )
make[1]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/INSTALL'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/INSTALL'
  ASCII character set
  Tests completed
  Epsilon                      =    5.96046448E-08
  Safe minimum                 =    1.17549435E-38
  Base                         =    2.00000000    
  Precision                    =    1.19209290E-07
  Number of digits in mantissa =    24.0000000    
  Rounding mode                =    1.00000000    
  Minimum exponent             =   -125.000000    
  Underflow threshold          =    1.17549435E-38
  Largest exponent             =    128.000000    
  Overflow threshold           =    3.40282347E+38
  Reciprocal of safe minimum   =    8.50705917E+37
  Epsilon                      =    1.1102230246251565E-016
  Safe minimum                 =    2.2250738585072014E-308
  Base                         =    2.0000000000000000     
  Precision                    =    2.2204460492503131E-016
  Number of digits in mantissa =    53.000000000000000     
  Rounding mode                =    1.0000000000000000     
  Minimum exponent             =   -1021.0000000000000     
  Underflow threshold          =    2.2250738585072014E-308
  Largest exponent             =    1024.0000000000000     
  Overflow threshold           =    1.7976931348623157E+308
  Reciprocal of safe minimum   =    4.4942328371557898E+307
 Time for  0.100E+09 SAXPY ops =  0.785E-02 seconds
 SAXPY performance rate        =  0.127E+05 mflops 
 Including SECOND, time        =  0.163E-01 seconds
 Average time for SECOND       =  0.169E-03 milliseconds
 Equivalent floating point ops =  0.216E+04 ops
 Time for  0.100E+09 DAXPY ops =  0.139E-01 seconds
 DAXPY performance rate        =  0.721E+04 mflops 
 Including DSECND, time        =  0.230E-01 seconds
 Average time for DSECND       =  0.182E-03 milliseconds
 Equivalent floating point ops =  0.132E+04 ops
 We are about to check whether infinity arithmetic
 can be trusted.  If this test hangs, set
 ILAENV = 0 for ISPEC = 10 in LAPACK/SRC/ilaenv.f

 Infinity arithmetic performed as per the ieee spec.
 However, this is not an exhaustive test and does not
 guarantee that infinity arithmetic meets the ieee spec.

 We are about to check whether NaN arithmetic
 can be trusted.  If this test hangs, set
 ILAENV = 0 for ISPEC = 11 in LAPACK/SRC/ilaenv.f

 NaN arithmetic performed as per the ieee spec.
 However, this is not an exhaustive test and does not
 guarantee that NaN arithmetic meets the ieee spec.

 LAPACK            3 .           5 .           0
( cd SRC; make )
make[1]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/SRC'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/SRC'
( cd lapacke; make )
make[1]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke'
cd include && cp lapacke_mangling_with_flags.h lapacke_mangling.h
cd src && make
make[2]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/src'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/src'
cd utils && make
make[2]: Entering directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/utils'
ar rc ../../liblapacke.a lapacke_cgb_nancheck.o lapacke_cgb_trans.o lapacke_cge_nancheck.o lapacke_cge_trans.o lapacke_cgg_nancheck.o lapacke_cgg_trans.o lapacke_cgt_nancheck.o lapacke_chb_nancheck.o lapacke_chb_trans.o lapacke_che_nancheck.o lapacke_che_trans.o lapacke_chp_nancheck.o lapacke_chp_trans.o lapacke_chs_nancheck.o lapacke_chs_trans.o lapacke_c_nancheck.o lapacke_cpb_nancheck.o lapacke_cpb_trans.o lapacke_cpf_nancheck.o lapacke_cpf_trans.o lapacke_cpo_nancheck.o lapacke_cpo_trans.o lapacke_cpp_nancheck.o lapacke_cpp_trans.o lapacke_cpt_nancheck.o lapacke_csp_nancheck.o lapacke_csp_trans.o lapacke_cst_nancheck.o lapacke_csy_nancheck.o lapacke_csy_trans.o lapacke_ctb_nancheck.o lapacke_ctb_trans.o lapacke_ctf_nancheck.o lapacke_ctf_trans.o lapacke_ctp_nancheck.o lapacke_ctp_trans.o lapacke_ctr_nancheck.o lapacke_ctr_trans.o lapacke_dgb_nancheck.o lapacke_dgb_trans.o lapacke_dge_nancheck.o lapacke_dge_trans.o lapacke_dgg_nancheck.o lapacke_dgg_trans.o lapacke_dgt_nancheck.o lapacke_dhs_nancheck.o lapacke_dhs_trans.o lapacke_d_nancheck.o lapacke_dpb_nancheck.o lapacke_dpb_trans.o lapacke_dpf_nancheck.o lapacke_dpf_trans.o lapacke_dpo_nancheck.o lapacke_dpo_trans.o lapacke_dpp_nancheck.o lapacke_dpp_trans.o lapacke_dpt_nancheck.o lapacke_dsb_nancheck.o lapacke_dsb_trans.o lapacke_dsp_nancheck.o lapacke_dsp_trans.o lapacke_dst_nancheck.o lapacke_dsy_nancheck.o lapacke_dsy_trans.o lapacke_dtb_nancheck.o lapacke_dtb_trans.o lapacke_dtf_nancheck.o lapacke_dtf_trans.o lapacke_dtp_nancheck.o lapacke_dtp_trans.o lapacke_dtr_nancheck.o lapacke_dtr_trans.o lapacke_lsame.o lapacke_sgb_nancheck.o lapacke_sgb_trans.o lapacke_sge_nancheck.o lapacke_sge_trans.o lapacke_sgg_nancheck.o lapacke_sgg_trans.o lapacke_sgt_nancheck.o lapacke_shs_nancheck.o lapacke_shs_trans.o lapacke_s_nancheck.o lapacke_spb_nancheck.o lapacke_spb_trans.o lapacke_spf_nancheck.o lapacke_spf_trans.o lapacke_spo_nancheck.o lapacke_spo_trans.o lapacke_spp_nancheck.o lapacke_spp_trans.o lapacke_spt_nancheck.o lapacke_ssb_nancheck.o lapacke_ssb_trans.o lapacke_ssp_nancheck.o lapacke_ssp_trans.o lapacke_sst_nancheck.o lapacke_ssy_nancheck.o lapacke_ssy_trans.o lapacke_stb_nancheck.o lapacke_stb_trans.o lapacke_stf_nancheck.o lapacke_stf_trans.o lapacke_stp_nancheck.o lapacke_stp_trans.o lapacke_str_nancheck.o lapacke_str_trans.o lapacke_xerbla.o lapacke_zgb_nancheck.o lapacke_zgb_trans.o lapacke_zge_nancheck.o lapacke_zge_trans.o lapacke_zgg_nancheck.o lapacke_zgg_trans.o lapacke_zgt_nancheck.o lapacke_zhb_nancheck.o lapacke_zhb_trans.o lapacke_zhe_nancheck.o lapacke_zhe_trans.o lapacke_zhp_nancheck.o lapacke_zhp_trans.o lapacke_zhs_nancheck.o lapacke_zhs_trans.o lapacke_z_nancheck.o lapacke_zpb_nancheck.o lapacke_zpb_trans.o lapacke_zpf_nancheck.o lapacke_zpf_trans.o lapacke_zpo_nancheck.o lapacke_zpo_trans.o lapacke_zpp_nancheck.o lapacke_zpp_trans.o lapacke_zpt_nancheck.o lapacke_zsp_nancheck.o lapacke_zsp_trans.o lapacke_zst_nancheck.o lapacke_zsy_nancheck.o lapacke_zsy_trans.o lapacke_ztb_nancheck.o lapacke_ztb_trans.o lapacke_ztf_nancheck.o lapacke_ztf_trans.o lapacke_ztp_nancheck.o lapacke_ztp_trans.o lapacke_ztr_nancheck.o lapacke_ztr_trans.o lapacke_make_complex_float.o lapacke_make_complex_double.o
/usr/bin/ranlib ../../liblapacke.a
make[2]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke/utils'
make[1]: Leaving directory `/home/erol/plasma-installer_2.7.1/build/lapack-3.5.0/lapacke'