R 闪亮-渲染不起作用
我有一个shinyApp，在某种程度上，它使用函数“pathview”在工作目录中生成png图像。我想使用renderImage在应用程序中显示它，但shiny似乎查看了一个临时文件目录（这是另一个使用另一个函数生成的图像的情况，它可以工作）。如何指定渲染的正确路径 这是相关代码（原始应用程序较长，我隔离了相关部分-它应该可以在您的计算机上工作），但您需要输入数据（问题末尾粘贴的副本，希望它可以工作） 谢谢 这是代码（粘贴到这里有点麻烦-我希望缩进会保持正确）：R 闪亮-渲染不起作用,r,image,path,shiny,render,R,Image,Path,Shiny,Render,我有一个shinyApp，在某种程度上，它使用函数“pathview”在工作目录中生成png图像。我想使用renderImage在应用程序中显示它，但shiny似乎查看了一个临时文件目录（这是另一个使用另一个函数生成的图像的情况，它可以工作）。如何指定渲染的正确路径 这是相关代码（原始应用程序较长，我隔离了相关部分-它应该可以在您的计算机上工作），但您需要输入数据（问题末尾粘贴的副本，希望它可以工作） 谢谢 这是代码（粘贴到这里有点麻烦-我希望缩进会保持正确）： 我已经修改了服务器代码的一部分，
我已经修改了服务器代码的一部分，以便图像呈现。请查看下面的代码：
observe({
if (input$startkegg != 0) {
kegg <- reactive({ enrichKEGG(entrezIDs(), pAdjustMethod=input$adjmk, pvalueCutoff=input$keggp, qvalueCutoff=input$keggq)})
output$pathway1 <- renderImage({
width <- session$clientData$output_pathway1_width
height <- session$clientData$output_pathway1_height
#This is the file that will be saved
outfile <- paste0(tempdir(),"\\",as.matrix(as.data.frame(kegg())[1])[1:1], ".png")
#Save the file in the temp folder
pathview(gene.data=entrezIDs(), pathway.id=as.matrix(as.data.frame(kegg())[1])[1:1],species = "hsa",
limit=3, kegg.dir = tempdir())
# Pathview generates a png file (it is possible to generate many png at once by changing '[1:1]' by other numbers)
list(src = outfile,
contentType = 'image/png+xml',
width = width,
height = height,
alt = "plotGoGraph")
}, deleteFile =FALSE)
}
})
观察({
如果（输入$startkegg！=0）{
kegg如前一个问题中所建议的那样：创建一个最小的示例，任何人都可以在他们的R环境中复制和粘贴以复制-并尝试修复-您的问题，但您需要我的输入文件才能使其正常工作，这就是为什么我没有这样做。我一回到家就会尝试复制并粘贴到问题中。我像您问的那样：）。我希望有人能给出答案。它部分有效，非常感谢！我在应用程序中有图像，但如果我更改参数（pvalue、qvalue、padjustmethod）或尝试重新启动应用程序，我会出现错误：“readPNG中的错误：文件不是PNG格式”.我每次都必须关闭并重新启动RStudio。是否有某个地方缺少无功值？或路径出错？
Ensembl_Gene_ID Gene_Symbol log2FC p_value adj_pvalue
ENSG00000090339 ICAM1 6,6698404077 0 0
ENSG00000108691 CCL2 6,3927430651 0 0
ENSG00000118503 TNFAIP3 4,1752383048 0 0
ENSG00000162692 VCAM1 9,0516122689 0 0
ENSG00000185215 TNFAIP2 3,3128766885 0 0
ENSG00000169429 IL8 3,4854038547 1,49E-291 4,76E-288
ENSG00000077150 NFKB2 3,6760936413 9,72E-277 2,82E-273
ENSG00000100906 NFKBIA 2,8107738915 1,69E-238 4,50E-235
ENSG00000161011 SQSTM1 1,404984023 6,60E-87 3,91E-84
ENSG00000164251 F2RL1 2,228720453 7,80E-174 1,25E-170
ENSG00000145365 TIFA 2,4827316786 9,05E-190 1,61E-186
ENSG00000056558 TRAF1 4,3219219715 0 0
ENSG00000104856 RELB 5,3740452546 0 0
ENSG00000007908 SELE 6,5992071817 0 0
ENSG00000023445 BIRC3 7,1013231569 0 0
ENSG00000128284 APOL3 3,0580886345 5,34E-219 1,31E-215
ENSG00000184371 CSF1 2,8747119649 1,34E-200 2,51E-197
ENSG00000160326 SLC2A6 2,371736578 7,25E-153 9,27E-150
ENSG00000112149 CD83 5,1849020913 6,25E-209 1,25E-205
ENSG00000169248 CXCL11 3,9885010193 3,59E-153 4,78E-150
ENSG00000163735 CXCL5 5,3189628206 6,02E-161 8,75E-158
ENSG00000006210 CX3CL1 6,2047905222 2,06E-142 2,53E-139
ENSG00000185101 ANO9 5,5319492083 6,65E-119 6,25E-116
ENSG00000227507 LTB 4,5693401008 8,35E-99 5,93E-96
ENSG00000086061 DNAJA1 0,6160659876 8,81E-20 1,04E-17
ENSG00000145632 PLK2 0,3743843813 3,41E-08 1,54E-06
ENSG00000137575 SDCBP 0,5110720979 1,04E-13 8,15E-12
ENSG00000185551 NR2F2 -0,4961472049 2,83E-13 2,15E-11
ENSG00000143878 RHOB 0,3760342184 1,01E-07 4,24E-06
ENSG00000163661 PTX3 0,7264569628 3,04E-18 3,32E-16
ENSG00000143321 HDGF 0,3691856958 2,76E-07 1,08E-05
ENSG00000166710 B2M 0,546357382 2,92E-12 2,01E-10
ENSG00000091527 CDV3 0,3818032113 4,70E-08 2,08E-06
ENSG00000167996 FTH1 0,2597510103 0,0013737609 0,0215751345
ENSG00000104951 IL4I1 3,4292833296 1,11E-140 1,27E-137
ENSG00000142871 CYR61 0,2496820627 0,0001860959 0,0039336139
ENSG00000172602 RND1 3,1459477897 1,09E-128 1,12E-125
ENSG00000008517 IL32 2,6720847487 6,15E-172 9,36E-169
ENSG00000049249 TNFRSF9 8,1430466274 1,04E-105 8,28E-103
ENSG00000188015 S100A3 4,0520465746 6,83E-108 5,60E-105
ENSG00000163739 CXCL1 3,2317419311 2,29E-210 4,88E-207
ENSG00000110848 CD69 3,9921576403 5,45E-104 4,15E-101
ENSG00000164932 CTHRC1 1,8587056384 4,35E-105 3,39E-102
ENSG00000124875 CXCL6 3,5080734691 2,70E-188 4,54E-185
ENSG00000115919 KYNU 3,8834279178 1,61E-103 1,20E-100
ENSG00000115009 CCL20 5,9380301295 1,03E-111 8,85E-109
ENSG00000159840 ZYX 0,221308813 0,0017025307 0,0255678561
ENSG00000234745 HLA-B 2,2802098006 8,97E-113 8,19E-110
ENSG00000160223 ICOSLG 3,4416028095 1,03E-218 2,34E-215
ENSG00000163545 NUAK2 3,2891894371 7,64E-96 4,98E-93
ENSG00000169245 CXCL10 8,4054198187 1,83E-94 1,17E-91
ENSG00000069493 CLEC2D 3,5342574865 1,45E-78 7,74E-76
ENSG00000204592 HLA-E 0,616047908 1,69E-15 1,49E-13
ENSG00000145901 TNIP1 2,0278859147 5,11E-158 7,11E-155
ENSG00000104312 RIPK2 1,48650534 3,65E-82 2,12E-79
ENSG00000123240 OPTN 1,7975448821 8,58E-123 8,57E-120
ENSG00000253522 MIR146A 3,3553807205 2,68E-72 1,28E-69
ENSG00000168394 TAP1 2,102288878 1,51E-131 1,61E-128
ENSG00000146232 NFKBIE 2,3570285443 3,87E-112 3,44E-109
ENSG00000205502 C2CD4B 2,9440001323 6,26E-74 3,18E-71
ENSG00000167100 SAMD14 1,9532366462 6,55E-69 2,91E-66
ENSG00000113504 SLC12A7 1,4720046424 9,48E-80 5,22E-77
ENSG00000100401 RANGAP1 0,6857346473 6,76E-20 8,09E-18
ENSG00000100767 PAPLN 2,3421900636 1,39E-78 7,52E-76
ENSG00000058085 LAMC2 1,5431664983 2,86E-53 1,04E-50
ENSG00000270607 RP11-359E10.1 2,3854036344 1,47E-70 6,72E-68
ENSG00000107201 DDX58 1,4595388552 1,70E-73 8,48E-71
ENSG00000081041 CXCL2 3,0262033543 7,41E-43 2,09E-40
ENSG00000163132 MSX1 2,7761598722 1,29E-66 5,51E-64
ENSG00000028277 POU2F2 2,0466146728 3,97E-65 1,65E-62
ENSG00000050730 TNIP3 3,229329092 1,37E-44 4,10E-42
ENSG00000128335 APOL2 1,473090214 2,09E-70 9,41E-68
ENSG00000237988 OR2I1P 7,8419334093 3,18E-67 1,37E-64
ENSG00000105246 EBI3 5,0935025027 1,23E-59 4,89E-57
ENSG00000124145 SDC4 1,407771963 6,90E-76 3,55E-73
ENSG00000115267 IFIH1 2,6863181071 9,94E-139 1,10E-135
ENSG00000112096 SOD2 1,7840242915 7,44E-121 7,21E-118
ENSG00000126561 STAT5A 1,382924375 6,59E-72 3,10E-69
ENSG00000144476 ACKR3 1,5463153496 1,10E-43 3,14E-41
ENSG00000132481 TRIM47 1,8400193127 3,47E-94 2,17E-91
ENSG00000115604 IL18R1 1,7758792324 4,38E-102 3,18E-99
ENSG00000064042 LIMCH1 -1,697667608 1,06E-57 4,09E-55
ENSG00000075223 SEMA3C 2,6428794379 4,87E-34 1,04E-31
ENSG00000271856 RP11-861A13.4 5,3162419344 7,11E-64 2,91E-61
ENSG00000107282 APBA1 -1,4667390864 1,85E-36 4,38E-34
ENSG00000163131 CTSS 2,6929454478 4,65E-111 3,91E-108
ENSG00000120337 TNFSF18 1,5716255441 8,91E-90 5,48E-87
ENSG00000166387 PPFIBP2 -1,3608246629 7,19E-36 1,62E-33
ENSG00000213859 KCTD11 1,0580714969 1,04E-23 1,52E-21
ENSG00000085831 TTC39A 2,4578133228 9,15E-25 1,41E-22
ENSG00000163513 TGFBR2 0,4969789653 3,46E-09 1,81E-07
ENSG00000139174 PRICKLE1 -1,4142683759 3,02E-73 1,48E-70
ENSG00000184530 C6orf58 6,0201724937 1,58E-51 5,42E-49
ENSG00000179862 CITED4 1,3708051503 1,16E-22 1,59E-20
ENSG00000115008 IL1A 2,6593891142 7,46E-43 2,09E-40
ENSG00000131037 EPS8L1 1,0947789046 4,79E-20 5,76E-18
ENSG00000117228 GBP1 1,2025593197 6,13E-52 2,15E-49
ENSG00000172738 TMEM217 1,9639810453 3,00E-54 1,10E-51
ENSG00000168314 MOBP 2,4845110741 2,38E-26 3,92E-24
ENSG00000134070 IRAK2 2,2955364885 2,08E-141 2,46E-138
ENSG00000198535 C2CD4A 4,577996172 1,20E-40 3,24E-38
ENSG00000163874 ZC3H12A 0,9381369244 1,78E-18 1,98E-16
ENSG00000185291 IL3RA 2,3420467737 8,82E-44 2,54E-41
ENSG00000105639 JAK3 2,495057148 1,52E-41 4,18E-39
ENSG00000171223 JUNB 2,0335078068 5,12E-81 2,87E-78
ENSG00000163347 CLDN1 2,4949072106 1,73E-27 2,96E-25
ENSG00000181656 GPR88 2,0975113695 4,44E-25 6,99E-23
ENSG00000164136 IL15 2,2652411451 6,11E-47 1,90E-44
ENSG00000178695 KCTD12 -0,7539496907 7,25E-23 9,98E-21
ENSG00000176907 C8orf4 1,6829692594 1,49E-81 8,50E-79
ENSG00000163734 CXCL3 3,0321033172 4,77E-32 9,58E-30
ENSG00000185022 MAFF 1,3309075932 1,13E-46 3,49E-44
ENSG00000163840 DTX3L 1,2171662272 6,27E-38 1,55E-35
ENSG00000240065 PSMB9 2,2505005445 4,07E-35 8,98E-33
ENSG00000204642 HLA-F 2,1177972557 2,64E-22 3,53E-20
ENSG00000125347 IRF1 1,4482064145 8,65E-58 3,37E-55
ENSG00000162772 ATF3 1,4948349223 4,86E-33 1,00E-30
ENSG00000027697 IFNGR1 1,0231240904 2,49E-36 5,76E-34
ENSG00000171408 PDE7B -1,169170306 1,73E-29 3,09E-27
ENSG00000168685 IL7R 2,125882044 2,32E-96 1,55E-93
ENSG00000177409 SAMD9L 1,2162404685 5,73E-32 1,14E-29
ENSG00000136560 TANK 1,1525846708 7,03E-51 2,34E-48
ENSG00000109320 NFKB1 1,5459523059 6,58E-87 3,91E-84
ENSG00000139263 LRIG3 1,2088786453 2,15E-62 8,69E-60
ENSG00000161940 BCL6B 1,1369814172 6,66E-51 2,24E-48
ENSG00000108984 MAP2K6 -1,378263906 1,92E-39 4,90E-37
ENSG00000132109 TRIM21 1,0587983659 4,22E-36 9,62E-34
ENSG00000136490 LIMD2 1,1414650881 2,93E-31 5,74E-29
ENSG00000169403 PTAFR 2,166927154 6,16E-21 7,66E-19
ENSG00000128274 A4GALT 0,9518357944 6,31E-14 5,03E-12
ENSG00000083799 CYLD 1,210521761 2,05E-42 5,70E-40
ENSG00000168310 IRF2 1,2216681724 4,91E-47 1,54E-44
ENSG00000012211 PRICKLE3 0,9224797711 1,10E-15 9,98E-14
ENSG00000121858 TNFSF10 1,6268549998 2,36E-58 9,33E-56
ENSG00000111339 ART4 1,1092601697 4,43E-36 1,00E-33
ENSG00000119917 IFIT3 1,426688259 6,75E-31 1,29E-28
ENSG00000110446 SLC15A3 2,1584288816 1,45E-33 3,05E-31
ENSG00000171608 PIK3CD 1,2125359085 8,36E-40 2,17E-37
ENSG00000143387 CTSK 1,6805693689 1,85E-49 5,96E-47
ENSG00000168961 LGALS9 1,1324240248 3,44E-13 2,59E-11
ENSG00000197951 ZNF71 0,967458386 3,97E-23 5,59E-21
ENSG00000135736 CCDC102A 1,0619472932 9,57E-18 1,02E-15
ENSG00000162654 GBP4 2,502767742 1,02E-97 7,09E-95
ENSG00000164342 TLR3 1,0648394078 1,68E-16 1,62E-14
ENSG00000117226 GBP3 1,1214295893 2,49E-47 7,88E-45
ENSG00000178726 THBD -1,4528817816 3,55E-25 5,62E-23
ENSG00000214530 STARD10 1,5633072958 1,11E-38 2,78E-36
ENSG00000138678 AGPAT9 -1,1430936762 5,60E-32 1,12E-29
ENSG00000150048 CLEC1A 1,2751911972 7,72E-55 2,87E-52
ENSG00000231925 TAPBP 1,3480413157 1,26E-68 5,52E-66
ENSG00000133401 PDZD2 2,3248274849 7,95E-40 2,08E-37
ENSG00000178078 STAP2 1,28193951 3,40E-23 4,80E-21
ENSG00000135932 CAB39 0,9256585597 1,46E-35 3,26E-33
ENSG00000159128 IFNGR2 0,9511059149 1,21E-34 2,61E-32
ENSG00000213886 UBD 7,6186044178 3,41E-22 4,51E-20
ENSG00000143457 GOLPH3L 0,9607766432 1,80E-39 4,63E-37
ENSG00000173391 OLR1 7,7114015901 5,57E-23 7,71E-21
ENSG00000156587 UBE2L6 0,8515373492 1,57E-16 1,53E-14
ENSG00000272269 RP11-500C11.3 1,6678950328 4,05E-66 1,70E-63
ENSG00000267607 CTD-2369P2.8 7,4805566417 1,05E-20 1,30E-18
ENSG00000010030 ETV7 3,5462544329 2,05E-25 3,29E-23
ENSG00000178038 ALS2CL 0,7803985197 1,34E-12 9,59E-11
ENSG00000154639 CXADR -1,0564152322 1,54E-29 2,77E-27
ENSG00000165801 ARHGEF40 1,4957938646 1,09E-51 3,79E-49
ENSG00000171227 TMEM37 -1,9016765305 1,14E-16 1,12E-14
ENSG00000145779 TNFAIP8 1,2349523996 1,40E-55 5,28E-53
ENSG00000162616 DNAJB4 -0,6648872946 1,48E-19 1,73E-17
ENSG00000132530 XAF1 1,0866278536 9,62E-23 1,32E-20
ENSG00000130589 HELZ2 1,2062416729 8,37E-46 2,52E-43
ENSG00000119922 IFIT2 1,6562895595 2,72E-16 2,58E-14
ENSG00000152689 RASGRP3 1,2913579655 9,56E-31 1,82E-28
ENSG00000154721 JAM2 2,7582655566 1,60E-23 2,30E-21
ENSG00000124212 PTGIS 1,3607275428 7,75E-29 1,35E-26
ENSG00000125898 FAM110A 0,7699331901 5,45E-11 3,40E-09
ENSG00000132003 ZSWIM4 1,7616984729 1,40E-72 6,76E-70
ENSG00000153721 CNKSR3 1,581266048 8,85E-39 2,23E-36
ENSG00000119714 GPR68 1,6813999238 1,50E-15 1,35E-13
ENSG00000163121 NEURL3 4,8947295863 2,82E-18 3,10E-16
ENSG00000204261 TAPSAR1 1,7286495357 2,63E-22 3,53E-20
ENSG00000152784 PRDM8 1,3177095327 2,45E-23 3,50E-21
ENSG00000155130 MARCKS 0,3369290495 4,18E-07 1,60E-05
ENSG00000149212 SESN3 -0,9948166535 7,71E-13 5,65E-11
ENSG00000100368 CSF2RB 1,0499093721 5,70E-33 1,17E-30
ENSG00000143466 IKBKE 1,1726116768 3,24E-48 1,04E-45
ENSG00000167207 NOD2 4,1387725935 8,46E-24 1,26E-21
ENSG00000100678 SLC8A3 5,436416856 9,64E-17 9,51E-15
ENSG00000169085 C8orf46 3,9179192668 7,17E-28 1,23E-25
ENSG00000196776 CD47 1,0211094014 8,26E-44 2,40E-41
ENSG00000102934 PLLP 1,7574549603 3,20E-37 7,74E-35
ENSG00000160190 SLC37A1 0,8662438352 9,61E-17 9,51E-15
ENSG00000167191 GPRC5B 1,3510883965 5,59E-51 1,90E-48
ENSG00000178882 FAM101A 1,0828435301 1,93E-39 4,90E-37
ENSG00000104825 NFKBIB 0,8083231505 7,72E-22 1,01E-19
ENSG00000119801 YPEL5 0,8034326357 4,90E-26 8,03E-24
ENSG00000181634 TNFSF15 1,4304497633 2,37E-37 5,79E-35
ENSG00000129667 RHBDF2 1,1649981551 6,94E-44 2,05E-41
ENSG00000184602 SNN 0,7740862573 1,48E-20 1,81E-18
ENSG00000100365 NCF4 4,558251281 4,52E-24 6,78E-22
ENSG00000183018 SPNS2 0,8902983353 1,71E-29 3,07E-27
ENSG00000166949 SMAD3 1,2851538162 1,07E-71 4,98E-69
ENSG00000130066 SAT1 1,0984598053 4,24E-40 1,13E-37
ENSG00000110218 PANX1 1,0458454628 7,65E-29 1,34E-26
ENSG00000160179 ABCG1 1,1614780131 1,63E-33 3,40E-31
ENSG00000139899 CBLN3 1,7931732267 3,03E-33 6,29E-31
ENSG00000090776 EFNB1 1,0699057643 7,00E-41 1,91E-38
ENSG00000164400 CSF2 4,5542622849 2,10E-13 1,62E-11
ENSG00000175155 YPEL2 0,9464573628 2,72E-23 3,87E-21
ENSG00000003137 CYP26B1 -2,5718415447 3,28E-37 7,89E-35
ENSG00000205220 PSMB10 1,0292991652 3,63E-16 3,41E-14
ENSG00000079156 OSBPL6 -0,9160285066 2,97E-15 2,58E-13
ENSG00000196878 LAMB3 0,9332660731 2,34E-30 4,34E-28
ENSG00000251136 RP11-37B2.1 1,203718483 8,06E-11 4,92E-09
ENSG00000198832 SELM 1,321494591 1,58E-24 2,43E-22
ENSG00000164035 EMCN -0,8736185363 1,02E-28 1,77E-26
ENSG00000166900 STX3 -0,869513786 3,29E-31 6,42E-29
ENSG00000141682 PMAIP1 0,8638748761 6,22E-29 1,09E-26
ENSG00000131669 NINJ1 0,8906736714 8,86E-26 1,44E-23
ENSG00000069399 BCL3 1,413913047 3,29E-46 1,00E-43
ENSG00000079102 RUNX1T1 -0,9911151505 2,07E-36 4,86E-34
ENSG00000227908 CTD-2031P19.3 2,3325227057 4,64E-17 4,65E-15
ENSG00000166224 SGPL1 0,8439625523 7,13E-25 1,11E-22
ENSG00000175183 CSRP2 0,8563780143 1,68E-12 1,20E-10
ENSG00000138675 FGF5 1,192502468 2,25E-25 3,60E-23
ENSG00000186827 TNFRSF4 5,8841358772 1,11E-17 1,18E-15
ENSG00000112299 VNN1 3,3660978538 1,64E-17 1,72E-15
ENSG00000178860 MSC 4,183307096 4,71E-14 3,78E-12
ENSG00000155324 GRAMD3 1,2255824988 6,50E-11 4,00E-09
ENSG00000185442 FAM174B -0,836626047 7,24E-22 9,49E-20
ENSG00000136883 KIF12 2,2885773567 1,13E-18 1,27E-16
ENSG00000235947 EGOT 6,7704547822 2,96E-12 2,03E-10
ENSG00000124721 DNAH8 -1,2678732696 2,92E-17 2,97E-15
ENSG00000159231 CBR3 1,5647327275 2,29E-52 8,13E-50
ENSG00000065491 TBC1D22B 0,8538972942 2,30E-26 3,80E-24
ENSG00000169242 EFNA1 1,4165954554 4,27E-40 1,13E-37
ENSG00000231360 AL592284.1 2,7073184262 4,36E-15 3,72E-13
ENSG00000221926 TRIM16 0,7029520377 3,73E-14 3,02E-12
ENSG00000272016 RP11-215G15.5 0,8117914573 1,13E-12 8,17E-11
ENSG00000151014 CCRN4L 1,0379114203 3,56E-24 5,36E-22
ENSG00000142961 MOB3C 0,997961002 3,26E-15 2,82E-13
ENSG00000171236 LRG1 2,3435370548 1,70E-15 1,49E-13
ENSG00000122861 PLAU 0,9088760584 8,82E-30 1,62E-27
ENSG00000127191 TRAF2 0,7563313941 4,45E-16 4,11E-14
ENSG00000175592 FOSL1 0,850193167 1,53E-30 2,88E-28
ENSG00000136842 TMOD1 2,1656895527 6,25E-17 6,25E-15
ENSG00000111801 BTN3A3 0,8389416662 3,24E-19 3,70E-17
ENSG00000048052 HDAC9 2,129043477 5,04E-34 1,07E-31
ENSG00000145911 N4BP3 1,4898252251 2,52E-29 4,48E-27
ENSG00000127472 PLA2G5 4,2086612089 3,06E-17 3,10E-15
ENSG00000146374 RSPO3 1,1440299676 8,21E-33 1,67E-30
ENSG00000165659 DACH1 -1,5561758479 7,59E-30 1,40E-27
ENSG00000213443 RP11-75L1.2 2,3331573508 7,07E-14 5,62E-12
ENSG00000162009 SSTR5 -2,7085099871 2,12E-13 1,63E-11
ENSG00000176697 BDNF -1,0585506837 4,57E-16 4,21E-14
ENSG00000134531 EMP1 -0,4110928344 1,93E-09 1,04E-07
ENSG00000064932 SBNO2 0,7580102147 9,23E-22 1,19E-19
ENSG00000103241 FOXF1 0,9686198954 2,33E-16 2,24E-14
ENSG00000111859 NEDD9 0,9160581572 1,69E-26 2,83E-24
ENSG00000109079 TNFAIP1 0,9377237493 1,37E-36 3,27E-34
ENSG00000081059 TCF7 0,7092656194 3,96E-10 2,27E-08
ENSG00000171246 NPTX1 1,7377387028 1,22E-11 8,01E-10
ENSG00000204264 PSMB8 0,6716991695 1,59E-15 1,41E-13
ENSG00000106688 SLC1A1 -0,7863595313 2,43E-22 3,27E-20
ENSG00000034152 MAP2K3 0,6419097183 1,11E-17 1,18E-15
ENSG00000125089 SH3TC1 0,7289249819 3,83E-16 3,58E-14
ENSG00000073849 ST6GAL1 1,2554852844 1,42E-52 5,09E-50
ENSG00000100911 PSME2 0,7116652869 4,03E-15 3,45E-13
ENSG00000134470 IL15RA 1,102594557 1,21E-34 2,61E-32
ENSG00000145777 TSLP 2,4138779529 5,47E-13 4,04E-11
ENSG00000204682 CASC10 1,5144410531 8,14E-22 1,06E-19
ENSG00000095739 BAMBI -0,7977061864 2,09E-11 1,35E-09
ENSG00000013297 CLDN11 0,4607939704 4,26E-12 2,89E-10
ENSG00000132274 TRIM22 0,677227739 1,44E-20 1,77E-18
ENSG00000163932 PRKCD 0,7708216872 1,26E-23 1,82E-21
ENSG00000221869 CEBPD 1,608895375 1,05E-29 1,93E-27
ENSG00000185361 TNFAIP8L1 0,7285886419 1,39E-21 1,78E-19
ENSG00000170689 HOXB9 1,8396661331 4,34E-21 5,44E-19
ENSG00000197646 PDCD1LG2 1,0196899604 1,21E-17 1,28E-15
ENSG00000164116 GUCY1A3 2,6004545429 4,70E-14 3,78E-12
ENSG00000184545 DUSP8 1,4675244694 1,17E-23 1,71E-21
ENSG00000117707 PROX1 -1,2550165503 4,12E-19 4,69E-17
ENSG00000137767 SQRDL 1,1255236894 1,74E-17 1,82E-15
ENSG00000071282 LMCD1 -0,9118384423 4,52E-14 3,65E-12
ENSG00000117525 F3 1,1822992014 5,09E-09 2,58E-07
ENSG00000127666 TICAM1 0,8064954922 2,30E-18 2,55E-16
ENSG00000107968 MAP3K8 1,4073405226 1,57E-22 2,13E-20
ENSG00000165685 TMEM52B 3,0865735935 4,16E-15 3,56E-13
ENSG00000126603 GLIS2 0,7834594541 7,02E-12 4,71E-10
ENSG00000143067 ZNF697 1,0177442557 9,12E-35 2,00E-32
ENSG00000100403 ZC3H7B 0,9618781013 9,95E-38 2,45E-35
ENSG00000149798 CDC42EP2 0,7806369468 6,07E-18 6,51E-16
ENSG00000169621 APLF 1,4855907744 8,43E-25 1,31E-22
ENSG00000206503 HLA-A 0,9350131142 9,76E-24 1,44E-21
ENSG00000113645 WWC1 2,2937570194 1,01E-16 9,89E-15
ENSG00000099250 NRP1 -0,5037267432 1,62E-12 1,16E-10
ENSG00000163719 MTMR14 0,5675343136 4,16E-13 3,10E-11
ENSG00000107821 KAZALD1 -1,4290087006 1,23E-11 8,07E-10
ENSG00000070404 FSTL3 1,1027505315 2,76E-29 4,87E-27
ENSG00000187210 GCNT1 -0,8686522938 4,71E-31 9,12E-29
ENSG00000133069 TMCC2 1,0413789794 1,68E-16 1,62E-14
ENSG00000131409 LRRC4B 1,2931498234 1,18E-10 7,13E-09
ENSG00000154451 GBP5 2,7013678594 1,83E-12 1,29E-10
ENSG00000166394 CYB5R2 0,7332646196 3,05E-12 2,09E-10
ENSG00000135114 OASL 2,1951538388 4,01E-11 2,55E-09
ENSG00000100342 APOL1 1,220028965 1,77E-35 3,93E-33
ENSG00000228536 RP11-392O17.1 2,7825337115 1,93E-09 1,04E-07
ENSG00000167034 NKX3-1 1,3585205916 2,32E-14 1,89E-12
ENSG00000185507 IRF7 0,8084085248 4,12E-08 1,85E-06
ENSG00000082641 NFE2L1 0,3652826186 2,25E-07 8,90E-06
ENSG00000187123 LYPD6 1,0308782093 3,26E-25 5,18E-23
ENSG00000174059 CD34 1,1102344592 7,81E-27 1,33E-24
ENSG00000178719 GRINA 0,8396601415 7,97E-24 1,19E-21
ENSG00000104213 PDGFRL 0,6828700248 1,96E-08 9,17E-07
ENSG00000149115 TNKS1BP1 0,7459528472 8,49E-22 1,10E-19
ENSG00000105499 PLA2G4C 1,3580795546 2,24E-23 3,20E-21
ENSG00000136048 DRAM1 0,7409353033 1,66E-24 2,52E-22
ENSG00000105327 BBC3 0,7261708499 7,85E-16 7,13E-14
ENSG00000125726 CD70 6,1411549057 4,39E-09 2,26E-07
ENSG00000136052 SLC41A2 1,4157227919 2,37E-40 6,38E-38
ENSG00000151883 PARP8 2,4975836849 2,04E-11 1,31E-09
ENSG00000102802 MEDAG -0,9069167651 6,00E-18 6,46E-16
ENSG00000161791 FMNL3 0,8876008674 1,60E-24 2,45E-22
ENSG00000235505 RP11-693N9.2 1,3375439579 6,56E-22 8,63E-20
ENSG00000166592 RRAD 2,2813391338 1,28E-11 8,41E-10
ENSG00000011132 APBA3 0,8498271597 3,31E-21 4,18E-19
ENSG00000152778 IFIT5 0,788230332 2,76E-12 1,91E-10
ENSG00000146021 KLHL3 -1,1835895681 1,63E-20 1,97E-18
ENSG00000186918 ZNF395 -0,8474414144 5,73E-13 4,22E-11
ENSG00000141384 TAF4B 1,0663419997 7,55E-15 6,33E-13
ENSG00000261618 RP11-79H23.3 6,1379496776 6,43E-09 3,21E-07
ENSG00000176170 SPHK1 0,6840743548 9,03E-18 9,65E-16
ENSG00000178764 ZHX2 0,646055016 3,32E-08 1,50E-06
ENSG00000131323 TRAF3 0,9936331075 1,50E-31 2,96E-29
ENSG00000111077 TENC1 -0,8569865373 1,32E-26 2,22E-24
ENSG00000108688 CCL7 3,2634690098 5,88E-11 3,64E-09
ENSG00000185972 CCIN 1,4017678544 6,24E-14 4,99E-12
ENSG00000171056 SOX7 0,5167198577 1,05E-11 6,95E-10
ENSG00000173114 LRRN3 4,3283970118 3,29E-08 1,49E-06
ENSG00000157368 IL34 3,3547659657 8,97E-13 6,53E-11
ENSG00000104903 LYL1 -0,8418136115 3,07E-22 4,07E-20
ENSG00000019582 CD74 3,0129058195 4,82E-15 4,08E-13
ENSG00000105974 CAV1 0,2932091817 9,21E-06 0,0002734463
ENSG00000060982 BCAT1 -0,3791961842 1,23E-07 5,09E-06
ENSG00000140105 WARS 0,3678696708 1,29E-07 5,30E-06
ENSG00000185862 EVI2B -0,7751849257 7,67E-13 5,63E-11
ENSG00000230024 RP11-95P13.1 2,2114928759 2,92E-10 1,70E-08
ENSG00000205683 DPF3 0,885344948 6,79E-25 1,06E-22
ENSG00000117298 ECE1 0,3157266591 3,07E-06 0,0001015302
ENSG00000167657 DAPK3 0,6431442219 2,12E-15 1,85E-13
ENSG00000137491 SLCO2B1 4,3274368507 4,19E-08 1,88E-06
ENSG00000113583 C5orf15 0,5402358913 3,06E-12 2,09E-10
ENSG00000270055 CTD-3092A11.2 0,7554364577 7,81E-19 8,85E-17
ENSG00000131979 GCH1 0,6475915098 2,22E-08 1,03E-06
ENSG00000133110 POSTN -1,4607784203 2,54E-16 2,42E-14
ENSG00000258376 RP4-647C14.2 1,0759940117 6,92E-16 6,31E-14
ENSG00000138735 PDE5A 0,7694825617 1,09E-08 5,27E-07
ENSG00000130813 C19orf66 0,7515725796 6,83E-11 4,20E-09
ENSG00000068079 IFI35 0,6235697941 1,17E-07 4,85E-06
ENSG00000103966 EHD4 0,3296977083 1,76E-06 6,09E-05
ENSG00000068323 TFE3 0,6380042855 7,25E-17 7,20E-15
ENSG00000158286 RNF207 1,4669614441 9,13E-24 1,35E-21
ENSG00000185432 METTL7A -0,7584393281 1,33E-17 1,40E-15
ENSG00000115525 ST3GAL5 -0,773362582 2,49E-10 1,46E-08
ENSG00000157214 STEAP2 -0,8210679404 3,15E-16 2,98E-14
ENSG00000272567 RP11-73K9.3 2,9091368904 8,12E-09 3,98E-07
ENSG00000039560 RAI14 0,2386460603 0,0020376264 0,0294805528
ENSG00000138496 PARP9 0,7105625312 3,91E-17 3,94E-15
ENSG00000137509 PRCP 0,3733976516 4,28E-07 1,63E-05
ENSG00000165449 SLC16A9 1,9129485254 2,60E-09 1,37E-07
ENSG00000119508 NR4A3 2,5623582992 2,34E-08 1,08E-06
ENSG00000135842 FAM129A 1,5252436186 1,45E-50 4,79E-48
ENSG00000110077 MS4A6A -1,8461966802 4,31E-13 3,21E-11
ENSG00000071575 TRIB2 -0,7680150878 4,23E-11 2,68E-09
ENSG00000125845 BMP2 0,7198947357 4,95E-23 6,91E-21
ENSG00000131459 GFPT2 0,9799396691 4,34E-34 9,30E-32
ENSG00000223749 MIR503HG -0,7622227546 2,06E-07 8,18E-06
ENSG00000110330 BIRC2 0,9547055389 2,68E-36 6,15E-34
ENSG00000066697 MSANTD3 0,5051725739 4,29E-12 2,90E-10
ENSG00000119938 PPP1R3C -0,790560028 5,29E-11 3,32E-09
ENSG00000267194 RP1-193H18.2 -1,5145912925 2,28E-14 1,86E-12
ENSG00000241839 PLEKHO2 0,6124896724 2,15E-13 1,65E-11
ENSG00000175354 PTPN2 0,5466696999 2,50E-12 1,74E-10
ENSG00000134321 RSAD2 3,0393073451 1,92E-08 8,98E-07
ENSG00000106560 GIMAP2 0,5431526321 1,76E-08 8,31E-07
ENSG00000136514 RTP4 3,2781934027 3,06E-08 1,39E-06
ENSG00000157191 NECAP2 0,6570089291 2,01E-17 2,09E-15
ENSG00000108771 DHX58 0,7262618335 4,77E-08 2,10E-06
ENSG00000131203 IDO1 3,313005567 2,77E-08 1,27E-06
observe({
if (input$startkegg != 0) {
kegg <- reactive({ enrichKEGG(entrezIDs(), pAdjustMethod=input$adjmk, pvalueCutoff=input$keggp, qvalueCutoff=input$keggq)})
output$pathway1 <- renderImage({
width <- session$clientData$output_pathway1_width
height <- session$clientData$output_pathway1_height
#This is the file that will be saved
outfile <- paste0(tempdir(),"\\",as.matrix(as.data.frame(kegg())[1])[1:1], ".png")
#Save the file in the temp folder
pathview(gene.data=entrezIDs(), pathway.id=as.matrix(as.data.frame(kegg())[1])[1:1],species = "hsa",
limit=3, kegg.dir = tempdir())
# Pathview generates a png file (it is possible to generate many png at once by changing '[1:1]' by other numbers)
list(src = outfile,
contentType = 'image/png+xml',
width = width,
height = height,
alt = "plotGoGraph")
}, deleteFile =FALSE)
}
})