在python 2.6上安装rpy2
我需要在运行Python2.6旧版CentOS的机器上从源代码安装包rpy2。rpy2的当前版本是2.5,并且它仅在python>=2.7上兼容 从中,我检查了最后几个版本,发现2.2是最后一个在Python2.6上运行的版本。很遗憾,它无法安装:在python 2.6上安装rpy2,python,centos,python-2.6,rpy2,centos5,Python,Centos,Python 2.6,Rpy2,Centos5,我需要在运行Python2.6旧版CentOS的机器上从源代码安装包rpy2。rpy2的当前版本是2.5,并且它仅在python>=2.7上兼容 从中,我检查了最后几个版本,发现2.2是最后一个在Python2.6上运行的版本。很遗憾,它无法安装: # python26 setup.py build install running build running build_py running build_ext Traceback (most recent call last): File
# python26 setup.py build install
running build
running build_py
running build_ext
Traceback (most recent call last):
File "setup.py", line 441, in <module>
[os.path.join('doc', 'source', 'rpy2_logo.png')])],
File "/usr/lib64/python2.6/distutils/core.py", line 152, in setup
dist.run_commands()
File "/usr/lib64/python2.6/distutils/dist.py", line 975, in run_commands
self.run_command(cmd)
File "/usr/lib64/python2.6/distutils/dist.py", line 995, in run_command
cmd_obj.run()
File "/usr/lib64/python2.6/distutils/command/build.py", line 134, in run
self.run_command(cmd_name)
File "/usr/lib64/python2.6/distutils/cmd.py", line 333, in run_command
self.distribution.run_command(command)
File "/usr/lib64/python2.6/distutils/dist.py", line 994, in run_command
cmd_obj.ensure_finalized()
File "/usr/lib64/python2.6/distutils/cmd.py", line 117, in ensure_finalized
self.finalize_options()
File "setup.py", line 152, in finalize_options
config += get_rconfig(r_home, about)
File "setup.py", line 312, in get_rconfig
rc = RConfig.from_string(rconfig, allow_empty = allow_empty)
File "setup.py", line 272, in from_string
+ '\nin string\n' + string)
ValueError: Invalid substring
-fopenmp
in string
-Wl,--export-dynamic -fopenmp -L/usr/lib64/R/lib -lR -lrt -ldl -lm
解决方案:
我需要安装以前版本的R 2.12或2.13,如中所述要使用较旧的rpy2,您可能还必须使用同样旧的R版本。作为替代方案,应该考虑从源代码编译最新的Python…是的,这就是问题所在!我安装了与rpy 2.2兼容的R版本,如我提供的链接中所述,并且一切正常。