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在R上安装xts包时出错

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在R上安装xts包时出错,r,xts,quantmod,r-package,R,Xts,Quantmod,R Package,在尝试安装quantmod软件包时，我从xts软件包中收到以下错误： > install.packages("quantmod", repos="http://R-Forge.R-project.org", type="source") also installing the dependencies ‘xts’, ‘TTR’ пробую URL 'http://R-Forge.R-project.org/src/contrib/xts_0.9.874.tar.gz' Content

在尝试安装quantmod软件包时，我从xts软件包中收到以下错误：

> install.packages("quantmod", repos="http://R-Forge.R-project.org", type="source")
also installing the dependencies ‘xts’, ‘TTR’

пробую URL 'http://R-Forge.R-project.org/src/contrib/xts_0.9.874.tar.gz'
Content type 'application/x-gzip' length 538182 bytes (525 KB)
==================================================
downloaded 525 KB

пробую URL 'http://R-Forge.R-project.org/src/contrib/TTR_0.22-0.1.tar.gz'
Content type 'application/x-gzip' length 276426 bytes (269 KB)
==================================================
downloaded 269 KB

пробую URL 'http://R-Forge.R-project.org/src/contrib/quantmod_0.4-3.tar.gz'
Content type 'application/x-gzip' length 123464 bytes (120 KB)
==================================================
downloaded 120 KB

* installing *source* package ‘xts’ ...
** libs
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c add_class.c -o add_class.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c any.c -o any.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c attr.c -o attr.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c binsearch.c -o binsearch.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c coredata.c -o coredata.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c diff.c -o diff.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c dimnames.c -o dimnames.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c endpoints.c -o endpoints.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c extract_col.c -o extract_col.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c init.c -o init.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c isOrdered.c -o isOrdered.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c isXts.c -o isXts.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c leadingNA.c -o leadingNA.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c merge.c -o merge.o
/usr/local/bin/gfortran   -fPIC  -g -O2  -c period.max.f -o period.max.o
/usr/local/bin/gfortran   -fPIC  -g -O2  -c period.min.f -o period.min.o
/usr/local/bin/gfortran   -fPIC  -g -O2  -c period.prod.f -o period.prod.o
/usr/local/bin/gfortran   -fPIC  -g -O2  -c period.sum.f -o period.sum.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c rbind.c -o rbind.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c rollfun.c -o rollfun.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c runSum.c -o runSum.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c startofyear.c -o startofyear.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c subset.c -o subset.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c subset.old.c -o subset.old.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c toperiod.c -o toperiod.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c totalcols.c -o totalcols.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c tryXts.c -o tryXts.o
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG  -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include"   -fPIC  -g -O2  -c unique.time.c -o unique.time.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/Cellar/r/3.2.1/R.framework/Resources/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o leadingNA.o merge.o period.max.o period.min.o period.prod.o period.sum.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0 -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5 -lgfortran -lquadmath -lm -F/usr/local/Cellar/r/3.2.1/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0'
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [xts.so] Error 1
ERROR: compilation failed for package ‘xts’
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/xts’
ERROR: dependency ‘xts’ is not available for package ‘TTR’
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/TTR’
ERROR: dependencies ‘xts’, ‘TTR’ are not available for package ‘quantmod’
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/quantmod’
我已经安装了gcc：

$ gcc -v
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn)
Target: x86_64-apple-darwin14.5.0
Thread model: posix

$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper
Target: x86_64-apple-darwin14.4.0
Configured with: ../configure --build=x86_64-apple-darwin14.4.0 --prefix=/usr/local/Cellar/gcc/5.2.0 --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.2.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib
Thread model: posix
gcc version 5.2.0 (Homebrew gcc 5.2.0)
我已经安装了gfortran：

$ gcc -v
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn)
Target: x86_64-apple-darwin14.5.0
Thread model: posix

$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper
Target: x86_64-apple-darwin14.4.0
Configured with: ../configure --build=x86_64-apple-darwin14.4.0 --prefix=/usr/local/Cellar/gcc/5.2.0 --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.2.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib
Thread model: posix
gcc version 5.2.0 (Homebrew gcc 5.2.0)
似乎错误的发生是因为错误的路径。我的计算机上没有
/usr/local/ceral/gcc/5.1.0/
，只有
/usr/local/ceral/gcc/5.2.0/
：

ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0'
    ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5'
    ld: library not found for -lgfortran
sessionInfo（）：

我怎样才能修好它

__

更新：

我还尝试了从

  • 从CRAN安装fotran编译器
  • 运行
    R CMD INSTALL xts_0.9.874.tar.gz
    不，我有：

    ...
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/Cellar/r/3.2.1/R.framework/Resources/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o leadingNA.o merge.o period.max.o period.min.o period.prod.o period.sum.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0 -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5 -lgfortran -lquadmath -lm -F/usr/local/Cellar/r/3.2.1/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0'
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5'
ld: library not found for -lquadmath
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [xts.so] Error 1
ERROR: compilation failed for package ‘xts’
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/xts’
    最终在这里找到了解决方案：

    这是：

  • 下载
    gfortran-4.8.2-darwin13.tar.bz2
    软件包
  • 通过运行
    sudo tar fvxz gfortran-4.8.2-darwin13.tar.bz2-C/
    • 然后我就跑

    R CMD INSTALL xts_0.9.874.tar.gz
    安装xts时没有错误（顺便说一句，我从中加载了最新的xts_0.9.874.tar.gz）。
    之后，quantmod安装无误。使用此命令：

    install.packages("quantmod", repos="http://R-Forge.R-project.org", type="source")
    它实际上是
    xts
    而不是
    quantmod
    ，这取决于它。发布
    sessionInfo（）
    可能很有用。尝试分别安装
    xts
    ，这可能有助于缩小安装范围。相关：@tonytonov I add sessionInfo（）和一些更新