在Ubuntu 18.04上安装新的R之后安装R依赖项时出错

系统：Ubuntu 18.04

出现的原始错误，提示我尝试重新安装R和依赖项：

Error: package or namespace load failed for 'lubridate' in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object '/usr/local/lib/R/site-library/stringi/libs/stringi.so':   libicui18n.so.57: cannot open shared object file: No such file or directory

/usr/local/lib/R/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated

The downloaded source packages are in
    '/tmp/RtmpnulsEe/downloaded_packages'
Warning message:
In install.packages(c("dplyr", "lubridate", "qcc", "forecast", "stringi"),  :
  installation of package 'forecast' had non-zero exit status

Error: package or namespace load failed for 'forecast' in dyn.load(file, DLLpath = DLLpath, ...): 
unable to load shared object '/usr/local/lib/R/site-library/curl/libs/curl.so':
/usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)

复制步骤：

Error: package or namespace load failed for 'lubridate' in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object '/usr/local/lib/R/site-library/stringi/libs/stringi.so':   libicui18n.so.57: cannot open shared object file: No such file or directory

/usr/local/lib/R/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated

The downloaded source packages are in
    '/tmp/RtmpnulsEe/downloaded_packages'
Warning message:
In install.packages(c("dplyr", "lubridate", "qcc", "forecast", "stringi"),  :
  installation of package 'forecast' had non-zero exit status

Error: package or namespace load failed for 'forecast' in dyn.load(file, DLLpath = DLLpath, ...): 
unable to load shared object '/usr/local/lib/R/site-library/curl/libs/curl.so':
/usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)

安装R:

apt安装R-base

尝试安装R依赖项：

install.packages（c（“dplyr”、“lubridate”、“qcc”、“forecast”）、repos=http://cran.us.r-project.org）

安装过程中显示的错误：

Error: package or namespace load failed for 'lubridate' in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object '/usr/local/lib/R/site-library/stringi/libs/stringi.so':   libicui18n.so.57: cannot open shared object file: No such file or directory

/usr/local/lib/R/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated

The downloaded source packages are in
    '/tmp/RtmpnulsEe/downloaded_packages'
Warning message:
In install.packages(c("dplyr", "lubridate", "qcc", "forecast", "stringi"),  :
  installation of package 'forecast' had non-zero exit status

Error: package or namespace load failed for 'forecast' in dyn.load(file, DLLpath = DLLpath, ...): 
unable to load shared object '/usr/local/lib/R/site-library/curl/libs/curl.so':
/usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)

清除并重新安装

r-base

和r依赖项后，我看到了这个…（已检查

libcurl4 openssl dev

是最新版本）：

Error: package or namespace load failed for 'lubridate' in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object '/usr/local/lib/R/site-library/stringi/libs/stringi.so':   libicui18n.so.57: cannot open shared object file: No such file or directory

/usr/local/lib/R/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated

The downloaded source packages are in
    '/tmp/RtmpnulsEe/downloaded_packages'
Warning message:
In install.packages(c("dplyr", "lubridate", "qcc", "forecast", "stringi"),  :
  installation of package 'forecast' had non-zero exit status

Error: package or namespace load failed for 'forecast' in dyn.load(file, DLLpath = DLLpath, ...): 
unable to load shared object '/usr/local/lib/R/site-library/curl/libs/curl.so':
/usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)

更新：显然这是

forecast

库中的内容，因为我复制了如下错误：

$ R
> library(forecast)
Error: package or namespace load failed for 'forecast' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/usr/local/lib/R/site-library/curl/libs/curl.so':
  /usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)

---

您最初的问题是

stringi

是针对

libicu

的发行包版本构建的，该版本已更改。由于此分发包不知道您在/usr/local中有

lubridate

，因此它会更改和中断内容

有很多方法可以解决这个问题。最简单（也是最狭窄）的方法是确保安装了

libicu-dev

。然后可以重新安装（即：重建

stringi

），然后加载

lubridate

剩下的你只是有点疯狂，把所有可以移动的东西都扔到墙上。您需要花点时间来认识到，您可以将所有这些作为二进制文件安装（即从launchpad的Michael Rutter PPAs安装），也可以从源代码安装。你的电话。我有一个更老的答案解释了差异（以及在这里的其他后续文章中），我们也在

r-sig-debian

列表中提供了帮助

---

但简而言之：阅读此（ESP前几段），并考虑PPAS。

< P> <强>尝试以下（每一步之间的清除和重新安装R）：< /强>

Error: package or namespace load failed for 'lubridate' in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object '/usr/local/lib/R/site-library/stringi/libs/stringi.so':   libicui18n.so.57: cannot open shared object file: No such file or directory

/usr/local/lib/R/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated

The downloaded source packages are in
    '/tmp/RtmpnulsEe/downloaded_packages'
Warning message:
In install.packages(c("dplyr", "lubridate", "qcc", "forecast", "stringi"),  :
  installation of package 'forecast' had non-zero exit status

Error: package or namespace load failed for 'forecast' in dyn.load(file, DLLpath = DLLpath, ...): 
unable to load shared object '/usr/local/lib/R/site-library/curl/libs/curl.so':
/usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)

apt吹扫r-base

在意识到没有一个PPA支持仿生海狸之前，添加/删除了几个不同的PPA。结果：

未找到发布

找到Michael Rutter的PPA并试图使用它。结果：来自上面的相同错误消息（

'CURL\u OPENSSL\u 3'未找到

）

尝试几种解决方案。结果：来自上面的相同错误消息（

'CURL\u OPENSSL\u 3'未找到

）

在R中阅读并执行以下操作：

> remove.packages("curl")
> install.packages("curl")
> install.packages(c("dplyr", "lubridate", "qcc", "forecast", "stringi", "curl"), repos='http://cran.us.r-project.org')

---

一切都如期进行。

我最近经常遇到这个问题。。。对于大多数软件包，安装

devtools

，然后从github进行安装，例如

devtools:：install\u github（“tidyverse/lubridate”）

是可行的。这是一个循环参数。OP说“帮助我，我无法从源代码安装”，而您说“在这里从源代码安装”。不能帮助他克服构建依赖。有趣的是。。。这就是我最初安装R（通过PPAs）的方式，它不工作，因此尝试通过发行版安装。让我在另一次清除后再试一次，看看是否能让它正常工作。现在我想起了为什么不能使用PPA:

get:10http://security.ubuntu.com/ubuntu 仿生安全性在Release[83.2 kB]错误：11https://cran.rstudio.com/bin/linux/ubuntu 未找到bionic/Release 404[IP:52.84.243.137 443]正在阅读软件包列表。。。完成E：存储库的https://cran.rstudio.com/bin/linux/ubuntu “仿生/发布”没有发布文件。N：无法安全地从这样的存储库进行更新，因此默认情况下禁用。N：有关存储库创建和用户配置的详细信息，请参阅apt secure（8）手册页。

除了Michael Rutter PPA（

sudo add apt repository PPA:marutter/rrutter

），我似乎找不到支持仿生的CRAN mirror/PPA，但我在尝试安装R或库时仍然会遇到错误…有两个：一个用于R3.5本身（），另一个用于包（）。更多信息，请参见Michael的博客（）。最后一步可以将二进制代码用于

r-cran-dplyr

，

r-cran-lubridate

。。。