R 每次循环x行的gsub

我不确定以前是否有人问过这个问题，如果可以更好地表达，请随意编辑这个问题的标题。我有一个需要移动的文件列表。它们存储在服务器上，并且非常大，因此移动它们需要一些时间。我一次只能移动10个文件，但我可以提交多个作业。所以我想做的是使用gsub和for循环来编辑一个包含前10个文件的脚本，然后是一个包含下10个要移动的文件的新脚本，然后是一个包含下10个要移动的文件的新脚本，依此类推。下面是我要移动的文件的示例。列表中有26个文件。。。我知道我说过我想10人一组，但我很好奇如果有6个样本而不是10个，会发生什么。输出文件可以命名为任何名称，这并不重要。它们显然需要独特。我还将附加我尝试运行的for循环，但我遇到的困难是在列表中循环，并创建一个唯一的名称

mcli <- structure(list(`mcli[c(1:25), ]` = structure(1:26, .Label = c("mcli mv --recursive /path/to/directory/D00063/alignment/ /path/to/directory/D00063/new.folder/alignment/", 
                                                                      "mcli mv --recursive /path/to/directory/D00063/bam/ /path/to/directory/D00063/new.folder/bam/", 
                                                                      "mcli mv --recursive /path/to/directory/D00063/fastqc/ /path/to/directory/D00063/new.folder/fastqc/", 
                                                                      "mcli mv --recursive /path/to/directory/D00063/gvcf/ /path/to/directory/D00063/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00063/trim/ /path/to/directory/D00063/new.folder/trim/", 
                                                                      "mcli mv --recursive /path/to/directory/D00064/alignment/ /path/to/directory/D00064/new.folder/alignment/", 
                                                                      "mcli mv --recursive /path/to/directory/D00064/bam/ /path/to/directory/D00064/new.folder/bam/", 
                                                                      "mcli mv --recursive /path/to/directory/D00064/fastqc/ /path/to/directory/D00064/new.folder/fastqc/", 
                                                                      "mcli mv --recursive /path/to/directory/D00064/gvcf/ /path/to/directory/D00064/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00064/trim/ /path/to/directory/D00064/new.folder/trim/", 
                                                                      "mcli mv --recursive /path/to/directory/D00105/gvcf/ /path/to/directory/D00105/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00151/gvcf/ /path/to/directory/D00151/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00188/gvcf/ /path/to/directory/D00188/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D002053/D02053/ /path/to/directory/D002053/new.folder/D02053/", 
                                                                      "mcli mv --recursive /path/to/directory/D00220/gvcf/ /path/to/directory/D00220/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00257/gvcf/ /path/to/directory/D00257/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00258/gvcf/ /path/to/directory/D00258/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00264/gvcf/ /path/to/directory/D00264/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00268/alignment/ /path/to/directory/D00268/new.folder/alignment/", 
                                                                      "mcli mv --recursive /path/to/directory/D00268/bam/ /path/to/directory/D00268/new.folder/bam/", 
                                                                      "mcli mv --recursive /path/to/directory/D00268/fastqc/ /path/to/directory/D00268/new.folder/fastqc/", 
                                                                      "mcli mv --recursive /path/to/directory/D00268/gvcf/ /path/to/directory/D00268/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00268/logs/ /path/to/directory/D00268/new.folder/logs/", 
                                                                      "mcli mv --recursive /path/to/directory/D00268/trim/ /path/to/directory/D00268/new.folder/trim/", 
                                                                      "mcli mv --recursive /path/to/directory/D00269/gvcf/ /path/to/directory/D00269/new.folder/gvcf/", 
                                                                      "mcli mv --recursive /path/to/directory/D00270/gvcf/ /path/to/directory/D00270/new.folder/gvcf/"), class = "factor")), .Names = "mcli[c(1:25), ]", row.names = c(NA, 
                                                                                                                                                                                                                                       -25L), class = "data.frame")

预期输出脚本2

#!/bin/bash -l
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=10
#SBATCH --mem-per-cpu=5gb
#SBATCH -t 20:00:00
#SBATCH --mail-type=ALL
#SBATCH --mail-user=bgwillia@umn.edu
#SBATCH -o %j.out
#SBATCH -e %j.err

srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00105/gvcf/ /path/to/directory/D00105/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00151/gvcf/ /path/to/directory/D00151/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00188/gvcf/ /path/to/directory/D00188/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D002053/D02053/ /path/to/directory/D002053/new.folder/D02053/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00220/gvcf/ /path/to/directory/D00220/new.folder/gvcf/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00257/gvcf/ /path/to/directory/D00257/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00258/gvcf/ /path/to/directory/D00258/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00264/gvcf/ /path/to/directory/D00264/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/alignment/ /path/to/directory/D00268/new.folder/alignment/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/bam/ /path/to/directory/D00268/new.folder/bam/ &

wait

预期输出脚本3

#!/bin/bash -l
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=10
#SBATCH --mem-per-cpu=5gb
#SBATCH -t 20:00:00
#SBATCH --mail-type=ALL
#SBATCH --mail-user=bgwillia@umn.edu
#SBATCH -o %j.out
#SBATCH -e %j.err

srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/fastqc/ /path/to/directory/D00268/new.folder/fastqc/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/gvcf/ /path/to/directory/D00268/new.folder/gvcf/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/logs/ /path/to/directory/D00268/new.folder/logs/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/trim/ /path/to/directory/D00268/new.folder/trim/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00269/gvcf/ /path/to/directory/D00269/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00270/gvcf/ /path/to/directory/D00270/new.folder/gvcf/ &

wait

---

我将对要运行的命令向量进行操作，而不是帧：

---

mcli的工作方式很有魅力！有没有办法将mcli保留为数据帧，而不是将其转换为字符。如果
mcli
是一个包含列
V1
的框架，那么类似于
脚本的东西是可以工作的。你在评论中写的有一点错误<代码>脚本对不起，是的，我应该键入
seq_len（nrow（mcli））
。我太匆忙了，别担心！！再次感谢你的帮助。我真的很感激！！
#!/bin/bash -l
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=10
#SBATCH --mem-per-cpu=5gb
#SBATCH -t 20:00:00
#SBATCH --mail-type=ALL
#SBATCH --mail-user=bgwillia@umn.edu
#SBATCH -o %j.out
#SBATCH -e %j.err


cd $SLURM_SUBMIT_DIR

srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00063/alignment/ /path/to/directory/D00063/new.folder/alignment/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00063/bam/ /path/to/directory/D00063/new.folder/bam/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00063/fastqc/ /path/to/directory/D00063/new.folder/fastqc/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00063/gvcf/ /path/to/directory/D00063/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00063/trim/ /path/to/directory/D00063/new.folder/trim/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00064/alignment/ /path/to/directory/D00064/new.folder/alignment/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00064/bam/ /path/to/directory/D00064/new.folder/bam/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00064/fastqc/ /path/to/directory/D00064/new.folder/fastqc/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00064/gvcf/ /path/to/directory/D00064/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00064/trim/ /path/to/directory/D00064/new.folder/trim/ & 

wait

#!/bin/bash -l
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=10
#SBATCH --mem-per-cpu=5gb
#SBATCH -t 20:00:00
#SBATCH --mail-type=ALL
#SBATCH --mail-user=bgwillia@umn.edu
#SBATCH -o %j.out
#SBATCH -e %j.err

srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00105/gvcf/ /path/to/directory/D00105/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00151/gvcf/ /path/to/directory/D00151/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00188/gvcf/ /path/to/directory/D00188/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D002053/D02053/ /path/to/directory/D002053/new.folder/D02053/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00220/gvcf/ /path/to/directory/D00220/new.folder/gvcf/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00257/gvcf/ /path/to/directory/D00257/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00258/gvcf/ /path/to/directory/D00258/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00264/gvcf/ /path/to/directory/D00264/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/alignment/ /path/to/directory/D00268/new.folder/alignment/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/bam/ /path/to/directory/D00268/new.folder/bam/ &

wait

#!/bin/bash -l
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=10
#SBATCH --mem-per-cpu=5gb
#SBATCH -t 20:00:00
#SBATCH --mail-type=ALL
#SBATCH --mail-user=bgwillia@umn.edu
#SBATCH -o %j.out
#SBATCH -e %j.err

srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/fastqc/ /path/to/directory/D00268/new.folder/fastqc/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/gvcf/ /path/to/directory/D00268/new.folder/gvcf/ &
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/logs/ /path/to/directory/D00268/new.folder/logs/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00268/trim/ /path/to/directory/D00268/new.folder/trim/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00269/gvcf/ /path/to/directory/D00269/new.folder/gvcf/ & 
srun --exclusive --ntasks 1 mcli mv --recursive /path/to/directory/D00270/gvcf/ /path/to/directory/D00270/new.folder/gvcf/ &

wait