R BioStyle渐晕图-无效参数";-/图html";
当我试图编译包含RStudio图形的R BioStyle渐晕图-无效参数";-/图html";,r,knitr,r-markdown,bioconductor,R,Knitr,R Markdown,Bioconductor,当我试图编译包含RStudio图形的BiocStylevignette时,会收到奇怪的警告消息。我相信这与自动剪辑图像有关,但我还没有完全弄清楚到底是怎么回事 最低工作示例: --- title: "Untitled" author: "test" output: BiocStyle::html_document vignette: > %\VignetteIndexEntry{Vignette Title} %\VignetteEngine{knitr::rmarkdo
BiocStyle
vignette时,会收到奇怪的警告消息。我相信这与自动剪辑图像有关,但我还没有完全弄清楚到底是怎么回事
最低工作示例:
---
title: "Untitled"
author: "test"
output:
BiocStyle::html_document
vignette: >
%\VignetteIndexEntry{Vignette Title}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
---
```{r pressure, echo=FALSE}
plot(pressure)
```
在将.rmd编译为.md时引发警告:无效参数-/figure html
但它会进一步编译为.html,但会发出额外警告:
output file: rmd_test.knit.md
Output created: rmd_test.html
Warning messages:
1: running command 'C:\WINDOWS\system32\cmd.exe /c convert "rmd_test_files/figure-html/pressure-1.png" -trim "rmd_test_files/figure-html/pressure-1.png"' had status 4
2: In shell(paste(c(cmd, args), collapse = " ")) :
'convert "rmd_test_files/figure-html/pressure-1.png" -trim "rmd_test_files/figure-html/pressure-1.png"' execution failed with error code 4
我运行的是Windows10和最新的R3.4.3
sessionInfo()
## R version 3.4.3 (2017-11-30)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 16299)
##
## Matrix products: default
##
## locale:
## [1] LC_COLLATE=English_United Kingdom.1252
## [2] LC_CTYPE=English_United Kingdom.1252
## [3] LC_MONETARY=English_United Kingdom.1252
## [4] LC_NUMERIC=C
## [5] LC_TIME=English_United Kingdom.1252
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] BiocStyle_2.6.1
##
## loaded via a namespace (and not attached):
## [1] compiler_3.4.3 backports_1.1.2 bookdown_0.6 magrittr_1.5
## [5] rprojroot_1.3-2 tools_3.4.3 htmltools_0.3.6 yaml_2.1.16
## [9] Rcpp_0.12.15 stringi_1.1.6 rmarkdown_1.8 knitr_1.19
## [13] xfun_0.1 stringr_1.2.0 digest_0.6.15 evaluate_0.10.1
我也面临同样的问题。如果你找到了一个解决方案,如果你能把它贴在这里就太好了。谢谢