无法在R 3.3.0上安装data.table软件包

我试图用R3.3.0安装'data.table'包，但它返回给定错误，如下所示。我安装了所有必需的软件包，但它对我毫无帮助

我在谷歌上搜索了同样的问题，但什么都没有

如果你有同样的问题，请分享你的经验来解决它。现在我觉得很奇怪

非常感谢， 肖恩

---

尝试添加

install.packages（“data.table”，dependencies=T）

？gcc--version说明了什么，即您的编译器是什么？forder.c的第296行是

#pragma omp atomic update

。所以Dirk询问gcc--version是正确的，因为这决定了OpenMP iiuc的版本。我不知道

gcc

何时开始支持

原子更新

，但我想很久以前。gcc版本是4.9.2 20150212（Red Hat 4.9.2-6）（gcc）。值得一提的是：我在centOS集群上遇到了与R3.5.0类似的问题，在通过我们的“模块”系统加载GCC4.9.0之后，通过

BioManager:：install

编译的包也很好。

> install.packages('data.table')
Installing package into ‘/usr/lib64/R/library’
(as ‘lib’ is unspecified)
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 3233k  100 3233k    0     0  2098k      0  0:00:01  0:00:01 --:--:-- 2205k
* installing *source* package ‘data.table’ ...
** package ‘data.table’ successfully unpacked and MD5 sums checked
** libs
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c assign.c -o assign.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c between.c -o between.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c bmerge.c -o bmerge.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c chmatch.c -o chmatch.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c dogroups.c -o dogroups.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c fastmean.c -o fastmean.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c fcast.c -o fcast.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c fmelt.c -o fmelt.o
gcc -m64 -std=gnu99 -I/usr/lib64/R/../../include/R -DNDEBUG  -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/zlib -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/xz -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include/bzip2 -I/builddir/build/BUILD/R-3.3.0/port/Linux-X64/include    -fopenmp -fpic  -g -O2  -c forder.c -o forder.o
forder.c: In function ‘range_str’:
forder.c:296: error: expected end of line before ‘update’
make: *** [forder.o] Error 1
ERROR: compilation failed for package ‘data.table’
* removing ‘/usr/lib64/R/library/data.table’

The downloaded source packages are in
        ‘/tmp/RtmpCfSYUU/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("data.table") :
  installation of package ‘data.table’ had non-zero exit status