合并IGraph时维护属性名称 问题
我有两个独立的网络,没有重叠的节点或边,它们都有相同的属性。我想把这两个网络合并成一个网络,然后由两个不同的组件组成 但是,当我尝试使用合并IGraph时维护属性名称 问题,r,merge,igraph,R,Merge,Igraph,我有两个独立的网络,没有重叠的节点或边,它们都有相同的属性。我想把这两个网络合并成一个网络,然后由两个不同的组件组成 但是,当我尝试使用union命令合并它们时,属性将从“attribute”重命名为“attribute_1”和“attribute_2”。命令帮助文件中说明了这一点,但我找不到一种明显的方法来合并这两个网络 下面的代码块显示了这种情况 library(igraph) #create a 4 node network of two components adjmat <-
union
命令合并它们时,属性将从“attribute”重命名为“attribute_1”和“attribute_2”。命令帮助文件中说明了这一点,但我找不到一种明显的方法来合并这两个网络
下面的代码块显示了这种情况
library(igraph)
#create a 4 node network of two components
adjmat <- rep(0, 16)
adjmat[c(2,5,12,15)] <- 1
g <- graph.adjacency(matrix(adjmat, nrow = 4) , mode = "undirected")
#give attributes naming the nodes and the edges
g <- set_vertex_attr(g, "name", value = paste0("Node_", 1:4))
g <- set_edge_attr(g, "name", value = paste0("Edge_",1:2))
#I am interested in the type attribute
g <- set_edge_attr(g, "type", value = c("foo", "bar"))
plot(g)
#Decompose into seperate networks
gList <- decompose(g)
g2 <-union(gList[[1]], gList[[2]])
#vertices are fine but edges have been renamed as stated in the helpfile for union.
get.edge.attribute(g2)
get.vertex.attribute(g2)
库(igraph)
#创建由两个组件组成的4节点网络
adjmat我制作了以下版本的union,它接受具有任意数量重叠属性的两个图形,并将它们合并到一个图形中,其中属性没有“x”后缀。这些图可以是完全独立的,也可以有重叠的节点。
在重叠节点的情况下,图1的属性优先
library(dplyr)
library(igraph)
union2<-function(g1, g2){
#Internal function that cleans the names of a given attribute
CleanNames <- function(g, target){
#get target names
gNames <- parse(text = (paste0(target,"_attr_names(g)"))) %>% eval
#find names that have a "_1" or "_2" at the end
AttrNeedsCleaning <- grepl("(_\\d)$", gNames )
#remove the _x ending
StemName <- gsub("(_\\d)$", "", gNames)
NewnNames <- unique(StemName[AttrNeedsCleaning])
#replace attribute name for all attributes
for( i in NewnNames){
attr1 <- parse(text = (paste0(target,"_attr(g,'", paste0(i, "_1"),"')"))) %>% eval
attr2 <- parse(text = (paste0(target,"_attr(g,'", paste0(i, "_2"),"')"))) %>% eval
g <- parse(text = (paste0("set_",target,"_attr(g, i, value = ifelse(is.na(attr1), attr2, attr1))"))) %>%
eval
g <- parse(text = (paste0("delete_",target,"_attr(g,'", paste0(i, "_1"),"')"))) %>% eval
g <- parse(text = (paste0("delete_",target,"_attr(g,'", paste0(i, "_2"),"')"))) %>% eval
}
return(g)
}
g <- igraph::union(g1, g2)
#loop through each attribute type in the graph and clean
for(i in c("graph", "edge", "vertex")){
g <- CleanNames(g, i)
}
return(g)
}
库(dplyr)
图书馆(igraph)
回答得很好。这是否可以扩展为接受n
图形列表?使用Reduce(union2,list(…))。然后列表中的每个图形将合并为一个图形。我想我们有一个非常相似的问题!
library(dplyr)
library(igraph)
union2<-function(g1, g2){
#Internal function that cleans the names of a given attribute
CleanNames <- function(g, target){
#get target names
gNames <- parse(text = (paste0(target,"_attr_names(g)"))) %>% eval
#find names that have a "_1" or "_2" at the end
AttrNeedsCleaning <- grepl("(_\\d)$", gNames )
#remove the _x ending
StemName <- gsub("(_\\d)$", "", gNames)
NewnNames <- unique(StemName[AttrNeedsCleaning])
#replace attribute name for all attributes
for( i in NewnNames){
attr1 <- parse(text = (paste0(target,"_attr(g,'", paste0(i, "_1"),"')"))) %>% eval
attr2 <- parse(text = (paste0(target,"_attr(g,'", paste0(i, "_2"),"')"))) %>% eval
g <- parse(text = (paste0("set_",target,"_attr(g, i, value = ifelse(is.na(attr1), attr2, attr1))"))) %>%
eval
g <- parse(text = (paste0("delete_",target,"_attr(g,'", paste0(i, "_1"),"')"))) %>% eval
g <- parse(text = (paste0("delete_",target,"_attr(g,'", paste0(i, "_2"),"')"))) %>% eval
}
return(g)
}
g <- igraph::union(g1, g2)
#loop through each attribute type in the graph and clean
for(i in c("graph", "edge", "vertex")){
g <- CleanNames(g, i)
}
return(g)
}
g4 <-union2(gList[[1]], gList[[2]])
#As we would like
get.edge.attribute(g4)
get.vertex.attribute(g4)