Perl 组合线的元素
我正在寻找这个问题的解决方案: 我有一个文件(选项卡分隔),如下面的blockquote所示。如你所见 有与第一部分匹配的行(粗体字段) chr4 164440449 165354407 G1 P8002-51-75Perl 组合线的元素,perl,file,awk,Perl,File,Awk,我正在寻找这个问题的解决方案: 我有一个文件(选项卡分隔),如下面的blockquote所示。如你所见 有与第一部分匹配的行(粗体字段) chr4 164440449 165354407 G1 P8002-51-75 chr1 220871675 220962596 G2P2368-132-84 chr1 220871675 220962596 G2P2369-152-116 chr1 220871675 220962596 G2P2371-180-82 chr1 220871675 22096
chr1 220871675 220962596 G2P2368-132-84
chr1 220871675 220962596 G2P2369-152-116
chr1 220871675 220962596 G2P2371-180-82
chr1 220871675 220962596 G2P2372-223-129
chr1 220871675 220962596 G2P2373-153-96
chr1 220871675 220962596 G2P2370-104-78
chr5 126198405 126416440 G3P9333-135-146
chr5 126198405 126416440 G3P9334-151-116
使用AWK或PERL,我如何能够保存制表符分隔格式来获得以下输出???一般的概念是根据第一部分统一行,并附加最后一个字段 chr4 164440449 165354407 G1 P8002-51-75
chr1 220871675 220962596 G2P2368-132-84 P2369-152-116 P2371-180-82 P2372-223-129 P2373-153-96 P2370-104-78
chr5 126198405 126416440 G3P9333-135-146 P9334-151-116
一般的概念是尝试根据第一部分统一行,并使用
perl
单向追加最后一个字段:
perl -ane '
## Save all fields but the last one as the key to compare between rows.
$key = join qq|\t|, @F[ 0 .. $#F - 1 ];
## In first line or when current key is equal to previous key, save last
## field in an array and stop processing current row.
if ( $. == 1 || $key eq $pkey ) {
$pkey = $key;
push @value, $F[ $#F ];
next unless eof;
}
## At this point, keys between rows are different, so print previous
## key with its values and begin to save the new one.
printf qq|%s\n|, join qq|\t|, $pkey, @value;
@value = ();
push @value, $F[ $#F ];
## Exception: Last line with a new key, print it.
if ( eof && $pkey ne $key ) {
printf qq|%s\n|, join qq|\t|, $key, @value;
}
## Save previous key.
$pkey = $key;
' infile
假设infle
包含您问题的数据,则输出为:
chr4 164440449 165354407 G1 P8002-51-75
chr1 220871675 220962596 G2 P2368-132-84 P2369-152-116 P2371-180-82 P2372-223-129 P2373-153-96 P2370-104-78
chr5 126198405 126416440 G3 P9333-135-146 P9334-151-116
使用
perl
的一种方法:
perl -ane '
## Save all fields but the last one as the key to compare between rows.
$key = join qq|\t|, @F[ 0 .. $#F - 1 ];
## In first line or when current key is equal to previous key, save last
## field in an array and stop processing current row.
if ( $. == 1 || $key eq $pkey ) {
$pkey = $key;
push @value, $F[ $#F ];
next unless eof;
}
## At this point, keys between rows are different, so print previous
## key with its values and begin to save the new one.
printf qq|%s\n|, join qq|\t|, $pkey, @value;
@value = ();
push @value, $F[ $#F ];
## Exception: Last line with a new key, print it.
if ( eof && $pkey ne $key ) {
printf qq|%s\n|, join qq|\t|, $key, @value;
}
## Save previous key.
$pkey = $key;
' infile
假设infle
包含您问题的数据,则输出为:
chr4 164440449 165354407 G1 P8002-51-75
chr1 220871675 220962596 G2 P2368-132-84 P2369-152-116 P2371-180-82 P2372-223-129 P2373-153-96 P2370-104-78
chr5 126198405 126416440 G3 P9333-135-146 P9334-151-116
while(){
($x,$y)=/^(.*)s([-\w]+)$/;
推送{$hash{$x}},$y;
}
而($k,$v)=每个%hash){
打印$k,join(“\t”,@{$v}),“\n”;
}
__资料__
chr4 164440449 165354407 G1 P8002-51-75
chr1 220871675 220962596 G2 P2368-132-84
chr1 220871675 220962596 G2 P2369-152-116
chr1 220871675 220962596 G2 P2371-180-82
chr1 220871675 220962596 G2 P2372-223-129
chr1 220871675 220962596 G2 P2373-153-96
chr1 220871675 220962596 G2 P2370-104-78
chr5 126198405 126416440 G3 P9333-135-146
chr5 126198405 126416440 G3 P9334-151-116
while(){
($x,$y)=/^(.*)s([-\w]+)$/;
推送{$hash{$x}},$y;
}
而($k,$v)=每个%hash){
打印$k,join(“\t”,@{$v}),“\n”;
}
__资料__
chr4 164440449 165354407 G1 P8002-51-75
chr1 220871675 220962596 G2 P2368-132-84
chr1 220871675 220962596 G2 P2369-152-116
chr1 220871675 220962596 G2 P2371-180-82
chr1 220871675 220962596 G2 P2372-223-129
chr1 220871675 220962596 G2 P2373-153-96
chr1 220871675 220962596 G2 P2370-104-78
chr5 126198405 126416440 G3 P9333-135-146
chr5 126198405 126416440 G3 P9334-151-116
请参阅:您的数据是否已按所示分组,或者某些行是否出现顺序错误?请参阅:您的数据是否已按所示分组,或者某些行是否出现顺序错误?