Python 3.x 当我运行conda下载的qtl seq命令时,我得到了错误。我正在执行以下命令
回溯(最近一次呼叫最后一次): 检查=真) 输出=标准输出,标准输出=标准输出) 文件“/home/jthakur/anaconda2/bin/qtlseq”,第11行,在 加载入口点(“qtlseq”、“控制台脚本”、“qtlseq”)() QTLseq(args.run()) 下院议员 self.concat() sys.exit()Python 3.x 当我运行conda下载的qtl seq命令时,我得到了错误。我正在执行以下命令,python-3.x,Python 3.x,回溯(最近一次呼叫最后一次): 检查=真) 输出=标准输出,标准输出=标准输出) 文件“/home/jthakur/anaconda2/bin/qtlseq”,第11行,在 加载入口点(“qtlseq”、“控制台脚本”、“qtlseq”)() QTLseq(args.run()) 下院议员 self.concat() sys.exit() [QTL-seq:2019-10-09 09:13:37] !!ERROR!! bcftools concat -a -O z -o Chikpea_qtl/
[QTL-seq:2019-10-09 09:13:37] !!ERROR!! bcftools concat -a -O z -o Chikpea_qtl/30_vcf/qtlseq.vcf.gz Chikpea_qtl/30_vcf/qtlseq.*.vcf.gz >> Chikpea_qtl/log/bcftools.log 2>&1
Failed to open Chikpea_qtl/30_vcf/qtlseq.NW_004516646.1.vcf.gz: could not load index
File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 191, in concat
File "/home/jthakur/anaconda2/lib/python3.6/subprocess.py", line 438, in run
subprocess.CalledProcessError: Command 'bcftools concat -a -O z -o Chikpea_qtl/30_vcf/qtlseq.vcf.gz Chikpea_qtl/30_vcf/qtlseq.*.vcf.gz >> Chikpea_qtl/log/bcftools.log 2>&1' returned non-zero exit status 255.
Traceback (most recent call last):
File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/qtlseq.py", line 192, in main
File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/qtlseq.py", line 123, in mpileup
File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 232, in run
File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 194, in concat
NameError: name 'sys' is not defined