导入错误：…/python2.7/site-packages/Scientific//u netcdf.so:未定义的符号：H5P\u CLS\u文件\u创建\u g

我在超级计算机中心分配的系统中安装了NetCDF，但当我运行python文件时，它显示： 导入错误：/public/home/geosign/opt/lib/python2.7/site-packages/Scientific//u netcdf.so:未定义的符号：H5P\u CLS\u文件\u创建\u g

进口恐怖主义：

    Traceback (most recent call last):
File "opt4.py", line 12, in <module>
    from ase.calculators.jacapo import Jacapo
  File "/public/home/geosign/opt/lib/python2.7/site-packages/ase/calculators/jacapo/__init__.py", line 3, in <module>
    from ase.calculators.jacapo.jacapo import *
  File "/public/home/geosign/opt/lib/python2.7/site-packages/ase/calculators/jacapo/jacapo.py", line 21, in <module>
    from Scientific.IO.NetCDF import NetCDFFile as netCDF
  File "/public/home/geosign/opt/lib/python2.7/site-packages/Scientific/IO/NetCDF.py", line 168, in <module>
    from Scientific._netcdf import *
ImportError: /public/home/geosign/opt/lib/python2.7/site-packages/Scientific/_netcdf.so: undefined symbol: H5P_CLS_FILE_CREATE_g

只有一件事值得怀疑。。。HDF5可能无法成功遵守，因为安装时会出现数百条类似警告（但是，由于我的专业不是CS，我无法完全理解）

我是如何配置hdf5的：

./configure --prefix=/public/home/geosign/usr --enable-hl --enable-shared --with-zlib=/public/home/geosign/usr  --enable-threadsafe --with-pthread=/usr

我是如何配置netcdf的：

 CPPFLAGS=-I/public/home/geosign/usr/include LDFLAGS=-L/public/home/geosign/usr/lib ./configure --prefix=/public/home/geosign/usr --enable-netcdf-4 --enable-shared

    # NetCDF C Configuration Summary
==============================

# General
-------
NetCDF Version:     4.3.3.1
Configured On:      Thu Oct 22 14:48:45 CST 2015
Host System:        x86_64-unknown-linux-gnu
Build Directory:    /public/home/geosign/software/netcdf-4.3.3.1
Install Prefix:         /public/home/geosign/usr

# Compiling Options
-----------------
C Compiler:     /usr/bin/gcc
CFLAGS:         -g -O2
CPPFLAGS:       -I/public/home/geosign/usr/include
LDFLAGS:        -L/public/home/geosign/usr/lib
AM_CFLAGS:      
AM_CPPFLAGS:        
AM_LDFLAGS:     
Shared Library:     yes
Static Library:     yes
Extra libraries:    -lhdf5_hl -lhdf5 -ldl -lm -lz 

# Features
--------
NetCDF-2 API:       yes
NetCDF-4 API:       yes
HDF4 Support:       no
HDF5 Support:       yes
PNetCDF Support:    no
Parallel Support:   no
DAP Support:        no
Diskless Support:   yes
MMap Support:       no
JNA Support:        no

---

多谢各位！我已经做了好几天了……真伤心您是否已将

/public/home/geosign/usr/lib

添加到

LD\u lirbaray\u路径

？如导出LD\u lirbaray\u路径=/public/home/geosign/usr/lib:$LD\u lirbaray\u路径是。我已经做到了。。。但它不起作用…我没有使用Scientific.\u netcdf，我建议您也应该使用python-netCDF4（Unidata托管包）。对于后者，我在“pip安装——允许所有外部”过程中声明了外部库，它可以工作。您是否将

/public/home/geosign/usr/lib

添加到

LD\u lirbaray\u PATH

？如导出LD\u lirbaray\u路径=/public/home/geosign/usr/lib:$LD\u lirbaray\u路径是。我已经做到了。。。但它不起作用…我没有使用Scientific.\u netcdf，我建议您也应该使用python-netCDF4（Unidata托管包）。对于后者，我在“pip安装——允许所有外部”期间声明了外部库，并且它可以工作。

./configure --prefix=/public/home/geosign/usr --enable-hl --enable-shared --with-zlib=/public/home/geosign/usr  --enable-threadsafe --with-pthread=/usr

 CPPFLAGS=-I/public/home/geosign/usr/include LDFLAGS=-L/public/home/geosign/usr/lib ./configure --prefix=/public/home/geosign/usr --enable-netcdf-4 --enable-shared

    # NetCDF C Configuration Summary
==============================

# General
-------
NetCDF Version:     4.3.3.1
Configured On:      Thu Oct 22 14:48:45 CST 2015
Host System:        x86_64-unknown-linux-gnu
Build Directory:    /public/home/geosign/software/netcdf-4.3.3.1
Install Prefix:         /public/home/geosign/usr

# Compiling Options
-----------------
C Compiler:     /usr/bin/gcc
CFLAGS:         -g -O2
CPPFLAGS:       -I/public/home/geosign/usr/include
LDFLAGS:        -L/public/home/geosign/usr/lib
AM_CFLAGS:      
AM_CPPFLAGS:        
AM_LDFLAGS:     
Shared Library:     yes
Static Library:     yes
Extra libraries:    -lhdf5_hl -lhdf5 -ldl -lm -lz 

# Features
--------
NetCDF-2 API:       yes
NetCDF-4 API:       yes
HDF4 Support:       no
HDF5 Support:       yes
PNetCDF Support:    no
Parallel Support:   no
DAP Support:        no
Diskless Support:   yes
MMap Support:       no
JNA Support:        no