'；getOption（“回购”）&x27；替换Bioconductor标准存储库，请参见'；？存储库'；详情

我正在使用它安装

maEndToEnd

软件包-

BiocManager::install("maEndToEnd", version = "devel")

它正在显示-

'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.13 (BiocManager 1.30.13), R 4.1.0 beta (2021-05-06 r80268)
Installing package(s) 'BiocVersion', 'maEndToEnd'
also installing the dependencies ‘formatR’, ‘lambda.r’, ‘futile.options’, ‘RCurl’, ‘GenomeInfoDbData’, ‘base64’, ‘htmlwidgets’, ‘futile.logger’, ‘snow’, ‘BH’, ‘fastmatch’, ‘tweenr’, ‘polyclip’, ‘RcppEigen’, ‘RcppArmadillo’, ‘backports’, ‘colorspace’, ‘patchwork’, ‘lazyeval’, ‘GenomeInfoDb’, ‘XVector’, ‘MatrixGenerics’, ‘DelayedArray’, ‘iterators’, ‘bit64’, ‘blob’, ‘plogr’, ‘bit’, ‘KEGGREST’, ‘gcrma’, ‘hexbin’, ‘BeadDataPackR’, ‘illuminaio’, ‘Formula’, ‘gridExtra’, ‘data.table’, ‘htmlTable’, ‘viridis’, ‘htmltools’, ‘base64enc’, ‘png’, ‘jpeg’, ‘systemfonts’, ‘BiocParallel’, ‘DO.db’, ‘fgsea’, ‘ggforce’, ‘ggrepel’, ‘tidygraph’, ‘graphlayouts’, ‘checkmate’, ‘bitops’, ‘farver’, ‘labeling’, ‘munsell’, ‘viridisLite’, ‘xtable’, ‘ape’, ‘aplot’, ‘tidytree’, ‘treeio’, ‘BiocGenerics’, ‘IRanges’, ‘GenomicRanges’, ‘SummarizedExperiment’, ‘Biostrings’, ‘affyio’, ‘foreach’, ‘S4Vectors’, ‘RSQLite’, ‘DBI’, ‘ff’, ‘XML’, ‘AnnotationDbi’, ‘org.Hs.eg.db’, ‘affxparser’, ‘preprocessCore’, ‘zlibbioc’, ‘affy’, ‘affyPLM’, ‘beadarray’, ‘gridSVG’, ‘Hmisc’, ‘hwriter’, ‘latticeExtra’, ‘setRNG’, ‘vsn’, ‘svglite’, ‘graph’, ‘GO.db’, ‘SparseM’, ‘DOSE’, ‘ggraph’, ‘reactome.db’, ‘igraph’, ‘graphite’, ‘downloader’, ‘GOSemSim’, ‘plyr’, ‘qvalue’, ‘rvcheck’, ‘gtools’, ‘caTools’, ‘gtable’, ‘isoband’, ‘scales’, ‘annotate’, ‘generics’, ‘tidyselect’, ‘cpp11’, ‘cowplot’, ‘reshape2’, ‘scatterpie’, ‘shadowtext’, ‘ggtree’, ‘Biobase’, ‘oligoClasses’, ‘ArrayExpress’, ‘pd.hugene.1.0.st.v1’, ‘hugene10sttranscriptcluster.db’, ‘oligo’, ‘arrayQualityMetrics’, ‘limma’, ‘topGO’, ‘ReactomePA’, ‘clusterProfiler’, ‘gplots’, ‘ggplot2’, ‘geneplotter’, ‘pheatmap’, ‘RColorBrewer’, ‘dplyr’, ‘tidyr’, ‘matrixStats’, ‘genefilter’, ‘openxlsx’, ‘Rgraphviz’, ‘enrichplot’

我正在使用R版本R-4.1.0beta。如何解决这个问题

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提前感谢。

您必须重新启动R。您需要查看BioManager 1.30.13.1——在上面我只看到1.30.13，因此请使用devtools:：install_github（“Bioconductor/BioManager”，ref=“ghost binary repo”）重试，然后再次启动R并尝试phyloseq安装

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BioManager 1.30.15自2021-05-11起在CRAN上，参见。