Fatal编程技术网
  • r/
  • 如何基于时间序列数据在R中创建网络列表

如何基于时间序列数据在R中创建网络列表

r

如何基于时间序列数据在R中创建网络列表,r,time-series,network-analysis,R,Time Series,Network Analysis,我试图通过时间序列来观察个人网络和网站访问。从本质上讲，我想要实现的最终结果类似于包“dnr”中的“Beats”数据集。我有一个较大的数据集dput，其子集显示在底部 基本上，我想split（）按Species和Week这两种方法来划分这个表，然后创建一个关联矩阵，其中包含TagID中不同值的行和基于站点访问中不同值的列。然后，我使用包igraph和graph\u（来自发病率矩阵）为每个物种每周创建一个独特的网络 我开始尝试按物种划分主表，然后每周为每个物种创建新表： DFsplit <-

我试图通过时间序列来观察个人网络和网站访问。从本质上讲，我想要实现的最终结果类似于包
“dnr”
中的
“Beats”
数据集。我有一个较大的数据集dput，其子集显示在底部

基本上，我想
split（）
按
Species
和
Week
这两种方法来划分这个表，然后创建一个关联矩阵，其中包含
TagID
中不同值的行和基于
站点访问中不同值的列。然后，我使用包
igraph
和
graph\u（来自发病率矩阵）
为每个物种每周创建一个独特的网络

我开始尝试按物种划分主表，然后每周为每个物种创建新表：


DFsplit <- split(DF, DF$Species)
DFsplit_cf <- split(DFsplit$Catfish, DFsplit$Catfish$Week)


我猜有一种方法可以避免这个错误，但我尝试过的方法都不管用。另外，如果有更干净的方法，我会洗耳恭听

dput：


我不确定这是否是你所说的关联表，但我们可以使用
dplyr
、
tidyr
和
magrittr


x$count <- 1
x2 <- split(x, x$Species)
x2 <- lapply(x2, function(x){split(x,x$Week)})
x3 <- lapply(x2, function(x){lapply(X=x, function(y){
  y <- y %>% spread(key = "SiteVisits",
                    value = "count",
                    fill =0) %>%
    select(-Species, -Week) %>% as.data.frame()
  rownames(y) <- y$TagID
  y <- y[,-1]
  y <- graph_from_incidence_matrix(y)
  return(y)
})})



x$count部分，您确实创建了正确形式的关联表，但第二部分是最难的部分（网络构建），让我看看是否可以找到一种方法来解决这个问题。不幸的是，我认为物种和周的划分是必要的，以便能够为每个物种每周创建一个单一的网络。
pivot\u wide
功能有点过分了。使用两个
lappy
函数，我们可以为每个组合生成关联表和图表。完美，快速
x4
y
的起始值本质上等同于调用
x2[[Species][[Week]]
。这应该有助于理解最内部的函数调用。我无法找到海滩数据集，但希望这足以满足您的问题。干杯

 Error in model.frame.default(formula = ~data[[i]][, 3] + data[[i]][, 4]) : 
  invalid type (list) for variable 'data[[i]][, 3]' 



structure(list(Species = c("Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Largemouth Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Catfish", "Catfish", "Catfish", 
"Catfish", "Catfish", "Catfish", "Catfish", "Catfish", "Catfish", 
"Catfish", "Catfish", "Catfish", "Catfish", "Catfish", "Catfish", 
"Catfish", "Catfish", "Catfish", "Catfish", "Catfish", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Largemouth Bass", "Largemouth Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Largemouth Bass", 
"Largemouth Bass", "Largemouth Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass", "Striped Bass", "Striped Bass", 
"Striped Bass", "Striped Bass"), Week = c(74, 74, 75, 76, 77, 
77, 77, 77, 77, 77, 78, 78, 79, 79, 79, 79, 79, 79, 79, 80, 80, 
80, 80, 81, 83, 83, 83, 83, 83, 84, 84, 84, 84, 84, 85, 85, 85, 
85, 85, 86, 86, 86, 86, 87, 88, 89, 90, 91, 92, 92, 92, 93, 93, 
93, 93, 93, 94, 94, 94, 95, 95, 95, 95, 95, 96, 96, 96, 96, 96, 
96, 96, 96, 97, 97, 97, 97, 98, 99, 99, 99, 99, 99, 100, 101, 
101, 101, 101, 101, 101, 101, 101, 102, 103, 103, 103, 103, 103, 
104, 104, 104, 104, 105, 105, 105, 105, 106, 106, 106, 106, 107, 
107, 107, 107, 108, 109, 110, 54, 54, 55, 55, 55, 56, 56, 56, 
57, 57, 57, 58, 60, 60, 60, 61, 61, 68, 68, 68, 69, 70, 70, 71, 
72, 73, 74, 74, 75, 76, 76, 77, 78, 78, 79, 80, 80, 81, 84, 86, 
86, 87, 88, 89, 90, 90, 91, 91, 92, 92, 93, 93, 94, 97, 97, 98, 
98, 98, 100, 100, 100, 101, 101, 101, 103, 103, 103, 164, 165, 
165, 165, 165, 166, 166, 166, 167, 168, 168, 168, 57, 58, 58, 
59, 60, 61, 61, 61, 62, 62, 63, 63, 63, 66, 70, 71, 74, 75, 76, 
76, 76, 76, 77, 78, 79, 80, 81, 82, 83, 84, 84, 20, 6, 7, 8, 
8, 8, 9, 9, 9, 10, 10, 10, 11, 11, 11, 12, 12, 12, 13, 13, 13, 
14, 14, 14, 15, 15, 16, 16, 17, 17, 17, 204, 204, 204, 205, 205, 
206, 206, 206, 207, 207, 207, 208, 208, 208, 209, 209, 209, 210, 
216, 228, 233, 233, 233, 234, 235, 236, 237, 239, 239, 240, 241, 
241, 242, 242, 243, 244, 244, 244, 245, 245, 64, 64, 64, 65, 
66, 67, 68, 69, 70, 71, 72, 72, 73, 73, 73, 74, 75, 76, 76, 76, 
77, 77, 77, 78, 78, 78, 79, 79, 79, 79, 80, 80, 81, 81, 83, 83, 
83, 84, 84, 84, 85, 86, 86, 87, 94, 95, 97, 97, 97, 97, 98, 99, 
99, 99, 100, 102, 103, 103, 103, 105, 106, 107, 107, 107, 107, 
108, 108, 108, 108, 109, 109, 109, 110, 110, 110, 110, 111, 111, 
111, 111, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 
98, 99, 100, 101, 102, 102, 102, 153, 154, 155, 156, 157, 158, 
159, 160, 161, 161, 161, 162, 162, 163, 163, 163, 164, 165, 166, 
49, 14, 14, 185, 47, 74, 74, 75, 75, 75, 76, 76, 76, 78, 78, 
78, 79, 80, 81, 82, 83, 83, 84, 84, 85, 85, 3, 3, 146, 147, 148, 
149, 149, 149, 150, 150, 150, 150, 150, 150, 109, 77, 78, 79, 
20, 20, 21, 21, 21, 22, 22, 22, 23, 23, 23, 23, 24, 25, 26, 27, 
27, 40, 40, 40, 40, 41, 41, 45, 45, 45, 50, 50, 50, 52, 52, 52, 
45, 45, 45, 46, 46, 46, 48, 48), TagID = c(5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 5004.24, 
5004.24, 5004.24, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 
5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5010.04, 5011.03, 
5011.03, 5011.03, 5011.03, 5011.03, 5011.03, 5011.03, 5011.03, 
5011.03, 5011.03, 5011.03, 5011.03, 5011.07, 5011.07, 5011.07, 
5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 
5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 
5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 
5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 5011.07, 
5017.06, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 
5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 
5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 
5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 5025.22, 
5025.22, 5025.22, 5025.22, 5025.26, 5025.26, 5025.26, 5025.26, 
5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 
5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 
5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 
5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 
5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 5025.26, 
5025.26, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 5032.24, 
5032.24, 5032.24, 5032.24, 5032.24, 5038.04, 5038.04, 5038.04, 
5038.04, 5038.04, 5038.04, 5038.04, 5038.04, 5038.04, 5038.04, 
5038.04, 5038.04, 5038.04, 5038.04, 5038.04, 5038.04, 5038.04, 
5038.04, 5038.04, 5038.04, 5039.03, 5039.03, 5039.03, 5039.03, 
5039.03, 5039.03, 5039.03, 5039.03, 5039.03, 5039.03, 5039.03, 
5039.03, 5039.03, 5039.03, 5039.03, 5039.03, 5039.03, 5039.03, 
5039.03, 5039.07, 5045, 5045, 5053.26, 5066.04, 5067.07, 5067.07, 
5067.07, 5067.07, 5067.07, 5067.07, 5067.07, 5067.07, 5067.07, 
5067.07, 5067.07, 5067.07, 5067.07, 5067.07, 5067.07, 5067.07, 
5067.07, 5067.07, 5067.07, 5067.07, 5067.07, 5073.06, 5073.06, 
5074.16, 5074.16, 5074.16, 5074.16, 5074.16, 5074.16, 5074.16, 
5074.16, 5074.16, 5074.16, 5074.16, 5074.16, 5088.11, 5094.04, 
5094.04, 5094.04, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 
5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 
5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 
5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 
5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5101.06, 5116.24, 
5116.24, 5116.24, 5116.24, 5116.24, 5116.24, 5116.24, 5116.24
), SiteVisits = c("IC1", "RGD1", "RGD1", "RGD1", "RGD1", "RGU1", 
"ORS1", "WC1", "WC2", "WC3", "WC2", "WC3", "IC3", "RGD1", "RGU1", 
"ORS1", "WC1", "WC2", "WC3", "RGD1", "RGU1", "WC2", "WC3", "WC3", 
"RGU1", "ORS1", "WC1", "WC2", "WC3", "RGU1", "ORS1", "WC1", "WC2", 
"WC3", "RGU1", "ORS1", "WC1", "WC2", "WC3", "RGD1", "RGU1", "ORS1", 
"WC1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "IC3", "IC1", 
"RGD1", "RGD1", "RGU1", "ORS1", "WC1", "WC2", "RGU1", "ORS1", 
"WC1", "RGU1", "ORS1", "WC1", "WC2", "WC3", "IC3", "IC1", "RGD1", 
"RGU1", "ORS1", "WC1", "WC2", "WC3", "RGD1", "WC1", "WC2", "WC3", 
"WC3", "RGD1", "RGU1", "WC1", "WC2", "WC3", "RGD1", "IC3", "IC2", 
"IC1", "RGD1", "RGU1", "WC1", "WC2", "WC3", "WC3", "RGD1", "RGU1", 
"WC1", "WC2", "WC3", "IC3", "IC2", "IC1", "RGD1", "IC3", "IC2", 
"IC1", "RGD1", "IC3", "IC2", "IC1", "RGD1", "IC3", "IC2", "IC1", 
"RGD1", "RGD1", "RGD1", "RGD1", "IC2", "IC1", "IC3", "IC2", "IC1", 
"IC3", "IC2", "IC1", "IC3", "IC2", "IC1", "IC1", "IC3", "IC2", 
"IC1", "IC2", "IC1", "IC3", "IC2", "IC1", "IC2", "IC3", "IC2", 
"IC1", "IC1", "IC1", "IC3", "IC1", "IC1", "IC3", "IC1", "IC1", 
"IC1", "RGD1", "RGD1", "IC3", "RGD1", "IC3", "IC2", "IC2", "IC1", 
"IC1", "IC1", "IC1", "IC3", "IC1", "IC3", "IC1", "IC3", "IC1", 
"IC3", "IC1", "IC1", "IC3", "IC1", "IC3", "IC2", "IC1", "IC3", 
"IC2", "IC1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC1", "RGD1", 
"IC3", "IC2", "IC1", "RGD1", "IC3", "IC2", "IC1", "RGD1", "IC2", 
"IC1", "RGD1", "IC1", "IC1", "RGD1", "IC1", "IC1", "IC3", "IC2", 
"IC1", "IC3", "IC1", "IC3", "IC2", "IC1", "RGD1", "RGD1", "RGD1", 
"RGD1", "RGD1", "IC3", "IC2", "IC1", "RGD1", "RGD1", "IC1", "RGD1", 
"RGD1", "RGD1", "RGD1", "RGD1", "IC2", "RGD1", "IC1", "IC1", 
"RGD1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC1", "IC3", "IC2", 
"IC1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC1", "IC3", "IC2", 
"IC1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC3", "IC2", "IC3", 
"IC2", "IC1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC3", "IC2", 
"IC1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC1", "IC3", "IC2", 
"IC1", "IC1", "IC1", "IC1", "IC3", "IC2", "IC1", "IC1", "IC1", 
"IC1", "IC1", "IC2", "IC1", "IC1", "IC2", "IC1", "IC2", "IC1", 
"IC1", "IC3", "IC2", "IC1", "IC2", "IC1", "IC3", "IC2", "RGD1", 
"RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "IC1", 
"RGD1", "IC2", "IC1", "RGD1", "RGD1", "RGD1", "IC3", "IC1", "RGD1", 
"IC3", "IC2", "IC1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC1", 
"RGD1", "IC3", "RGD1", "IC3", "RGD1", "IC3", "IC2", "RGD1", "IC3", 
"IC2", "RGD1", "RGD1", "IC2", "RGD1", "RGD1", "RGD1", "RGD1", 
"IC3", "IC2", "IC1", "RGD1", "RGD1", "IC2", "IC1", "RGD1", "RGD1", 
"IC1", "IC3", "IC2", "IC1", "RGD1", "RGD1", "IC3", "IC2", "IC1", 
"RGD1", "IC3", "IC2", "IC1", "RGD1", "IC3", "IC2", "IC1", "IC3", 
"IC2", "IC1", "RGD1", "IC3", "IC2", "IC1", "RGD1", "RGD1", "RGD1", 
"RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", 
"RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", 
"RGU1", "ORS1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", "RGD1", 
"RGD1", "RGD1", "IC2", "IC1", "RGD1", "IC2", "IC1", "IC2", "IC1", 
"RGD1", "RGD1", "RGD1", "RGD1", "IC1", "IC2", "IC1", "RGD1", 
"IC2", "IC3", "IC1", "IC3", "IC1", "RGD1", "IC2", "IC1", "RGD1", 
"IC3", "IC2", "IC1", "RGD1", "IC3", "IC3", "IC3", "IC3", "IC2", 
"IC3", "IC2", "IC3", "IC2", "IC2", "IC1", "RGD1", "RGD1", "RGD1", 
"RGD1", "RGU1", "ORS1", "RGU1", "ORS1", "WC1", "WC2", "GL1", 
"WC3", "RGD1", "IC1", "IC1", "IC1", "IC3", "IC2", "IC3", "IC2", 
"IC1", "IC3", "IC2", "IC1", "IC3", "IC2", "IC1", "RGD1", "RGD1", 
"RGD1", "RGD1", "RGD1", "RGU1", "ORS1", "WC1", "WC2", "WC3", 
"RGU1", "ORS1", "WC1", "WC2", "WC3", "WC1", "WC2", "WC3", "WC1", 
"WC2", "WC3", "IC2", "IC1", "RGD1", "IC3", "IC2", "IC1", "IC3", 
"IC2")), class = c("tbl_df", "tbl", "data.frame"), row.names = c(NA, 
-500L))



x$count <- 1
x2 <- split(x, x$Species)
x2 <- lapply(x2, function(x){split(x,x$Week)})
x3 <- lapply(x2, function(x){lapply(X=x, function(y){
  y <- y %>% spread(key = "SiteVisits",
                    value = "count",
                    fill =0) %>%
    select(-Species, -Week) %>% as.data.frame()
  rownames(y) <- y$TagID
  y <- y[,-1]
  y <- graph_from_incidence_matrix(y)
  return(y)
})})