安装问题：Linux Java和R不能一起工作
我几乎花了三天的时间在我的Linux机器上安装rJava和package FSelector，但都没有成功。 我搜索了所有的论坛并尝试了一些技巧。。。但不幸的是，我们找不到任何解决办法。 首先，我尝试在RKAVA中安装rJava，但没有任何更改，这给了我以下错误：安装问题：Linux Java和R不能一起工作,java,linux,r,Java,Linux,R,我几乎花了三天的时间在我的Linux机器上安装rJava和package FSelector，但都没有成功。 我搜索了所有的论坛并尝试了一些技巧。。。但不幸的是，我们找不到任何解决办法。 首先，我尝试在RKAVA中安装rJava，但没有任何更改，这给了我以下错误： configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard c
configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to fix this.
ERROR: configuration failed for package ‘rJava’
* removing ‘/home/uwe/.rkward/library/rJava’
Warnmeldung:
In install.packages(pkgs = c("rJava"), lib = "/home/uwe/.rkward/library", :
Installation des Pakets ‘rJava’ hatte Exit-Status ungleich 0
uwe@linux-k2a8:~> sudo R CMD javareconf
Java interpreter : /usr/bin/java
Java version : 1.7.0_45
Java home path : /usr/lib/jdk1.7.0_45/jre
Java compiler : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar
NOTE: Your JVM has a bogus java.library.path system property!
Trying a heuristic via sun.boot.library.path to find jvm library...
Java library path: $(JAVA_HOME)/lib/i386/client
JNI linker flags : -L$(JAVA_HOME)/lib/i386/client -ljvm
JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
Updating Java configuration in /usr/lib/R
Done.
uwe@linux-k2a8:~> java -version
java version "1.7.0_45"
Java(TM) SE Runtime Environment (build 1.7.0_45-b18)
Java HotSpot(TM) Server VM (build 24.45-b08, mixed mode)
uwe@linux-k2a8:~> sudo /usr/sbin/update-alternatives --config java
There are 4 choices for the alternative java (providing /usr/bin/java).
Selection Path Priority Status
------------------------------------------------------------
0 /usr/lib/jvm/jre-1.7.0-openjdk/bin/java 17147 auto mode
1 /usr/java/latest/bin/java 1 manual mode
* 2 /usr/lib/jdk_Oracle/bin/java 3 manual mode
3 /usr/lib/jvm/jre-1.5.0-gcj/bin/java 1500 manual mode
4 /usr/lib/jvm/jre-1.7.0-openjdk/bin/java 17147 manual mode
Press enter to keep the current choice[*], or type selection number:
uwe@linux-k2a8:~> uname -rm
3.4.63-2.44-desktop i686
uwe@linux-k2a8:~> cat /proc/version
Linux version 3.4.63-2.44-desktop (geeko@buildhost) (gcc version 4.7.1 20120723 [gcc-4_7-branch revision 189773] (S Linux) ) #1 SMP PREEMPT Wed Oct 2 11:18:32 UTC 2013 (d91a619)
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by rJava configure 0.8, which was
generated by GNU Autoconf 2.61. Invocation command line was
$ ./configure
## --------- ##
## Platform. ##
## --------- ##
hostname = linux-k2a8.site
uname -m = i686
uname -r = 3.4.63-2.44-desktop
uname -s = Linux
uname -v = #1 SMP PREEMPT Wed Oct 2 11:18:32 UTC 2013 (d91a619)
/usr/bin/uname -p = i686
/bin/uname -X = unknown
/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /home/uwe/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/bin/X11
PATH: /usr/X11R6/bin
PATH: /usr/games
PATH: /opt/kde3/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:1616: loading site script /usr/share/site/i686-pc-linux-gnu
| #!/bin/sh
| # Site script for configure. It is resourced via $CONFIG_SITE environment varaible.
|
| # If user did not specify libdir, guess the correct target:
| # Use lib64 for 64 bit bi-arch targets, keep the default for the rest.
| if test "$libdir" = '${exec_prefix}/lib' ; then
|
| ac_config_site_64bit_host=NONE
|
| case "$host" in
| "" )
| # User did not specify host target.
| # The native platform i386 is not a bi-arch platform.
| # There is no need to check for compatible sub-architecture.
| ac_config_site_64bit_host=NONE
|
| ;;
| *x86_64* | *ppc64* | *s390x* )
| ac_config_site_64bit_host=YES
| ;;
| esac
|
| if test "x$ac_config_site_64bit_host" = xYES; then
| libdir='${exec_prefix}/lib64'
| fi
| fi
|
| # If user did not specify libexecdir, set the correct target:
| # Nor FHS nor openSUSE allow prefix/libexec. Let's default to prefix/lib.
|
| if test "$libexecdir" = '${exec_prefix}/libexec' ; then
| libexecdir='${exec_prefix}/lib'
| fi
|
| # Continue with the standard behavior of configure defined in AC_SITE_LOAD:
| if test "x$prefix" != xNONE; then
| ac_site_file1=$prefix/share/config.site
| ac_site_file2=$prefix/etc/config.site
| else
| ac_site_file1=$ac_default_prefix/share/config.site
| ac_site_file2=$ac_default_prefix/etc/config.site
| fi
| for ac_site_file in "$ac_site_file1" "$ac_site_file2"
| do
| test "x$ac_site_file" = xNONE && continue
| if test /dev/null != "$ac_site_file" && test -r "$ac_site_file"; then
| { $as_echo "/usr/share/site/i686-pc-linux-gnu:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5
| $as_echo "/usr/share/site/i686-pc-linux-gnu: loading site script $ac_site_file" >&6;}
| sed 's/^/| /' "$ac_site_file" >&5
| . "$ac_site_file" \
| || { { $as_echo "/usr/share/site/i686-pc-linux-gnu:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
| $as_echo "/usr/share/site/i686-pc-linux-gnu: error: in \`$ac_pwd':" >&2;}
| as_fn_error $? "failed to load site script $ac_site_file
| See \`config.log' for more details" "$LINENO" 5; }
| fi
| done
configure:1847: checking for gcc
configure:1874: result: gcc -std=gnu99
configure:2112: checking for C compiler version
configure:2119: gcc -std=gnu99 --version >&5
gcc (SUSE Linux) 4.7.1 20120723 [gcc-4_7-branch revision 189773]
Copyright (C) 2012 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:2122: $? = 0
configure:2129: gcc -std=gnu99 -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/i586-suse-linux/4.7/lto-wrapper
Target: i586-suse-linux
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib --libexecdir=/usr/lib --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.7 --enable-ssp --disable-libssp --disable-libitm --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --program-suffix=-4.7 --enable-linux-futex --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=i586-suse-linux
Thread model: posix
gcc version 4.7.1 20120723 [gcc-4_7-branch revision 189773] (SUSE Linux)
configure:2132: $? = 0
configure:2139: gcc -std=gnu99 -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:2142: $? = 1
configure:2165: checking for C compiler default output file name
configure:2192: gcc -std=gnu99 -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:2195: $? = 0
configure:2233: result: a.out
configure:2250: checking whether the C compiler works
configure:2260: ./a.out
configure:2263: $? = 0
configure:2280: result: yes
configure:2287: checking whether we are cross compiling
configure:2289: result: no
configure:2292: checking for suffix of executables
configure:2299: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:2302: $? = 0
configure:2326: result:
configure:2332: checking for suffix of object files
configure:2358: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:2361: $? = 0
configure:2384: result: o
configure:2388: checking whether we are using the GNU C compiler
configure:2417: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:2423: $? = 0
configure:2440: result: yes
configure:2445: checking whether gcc -std=gnu99 accepts -g
configure:2475: gcc -std=gnu99 -c -g conftest.c >&5
configure:2481: $? = 0
configure:2580: result: yes
configure:2597: checking for gcc -std=gnu99 option to accept ISO C89
configure:2671: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:2677: $? = 0
configure:2700: result: none needed
configure:2728: checking how to run the C preprocessor
configure:2768: gcc -std=gnu99 -E conftest.c
configure:2774: $? = 0
configure:2805: gcc -std=gnu99 -E conftest.c
conftest.c:8:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:2811: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "rJava"
| #define PACKAGE_TARNAME "rjava"
| #define PACKAGE_VERSION "0.8"
| #define PACKAGE_STRING "rJava 0.8"
| #define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2844: result: gcc -std=gnu99 -E
configure:2873: gcc -std=gnu99 -E conftest.c
configure:2879: $? = 0
configure:2910: gcc -std=gnu99 -E conftest.c
conftest.c:8:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:2916: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "rJava"
| #define PACKAGE_TARNAME "rjava"
| #define PACKAGE_VERSION "0.8"
| #define PACKAGE_STRING "rJava 0.8"
| #define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2954: checking for grep that handles long lines and -e
configure:3028: result: /usr/bin/grep
configure:3033: checking for egrep
configure:3111: result: /usr/bin/grep -E
configure:3116: checking for ANSI C header files
configure:3146: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3152: $? = 0
configure:3251: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3254: $? = 0
configure:3260: ./conftest
configure:3263: $? = 0
configure:3280: result: yes
configure:3290: checking for sys/wait.h that is POSIX.1 compatible
configure:3326: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3332: $? = 0
configure:3347: result: yes
configure:3371: checking for sys/types.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for sys/stat.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for stdlib.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for string.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for memory.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for strings.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for inttypes.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for stdint.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3371: checking for unistd.h
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3398: $? = 0
configure:3414: result: yes
configure:3433: checking for string.h
configure:3439: result: yes
configure:3443: checking sys/time.h usability
configure:3460: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3466: $? = 0
configure:3480: result: yes
configure:3484: checking sys/time.h presence
configure:3499: gcc -std=gnu99 -E conftest.c
configure:3505: $? = 0
configure:3519: result: yes
configure:3552: checking for sys/time.h
configure:3560: result: yes
configure:3433: checking for unistd.h
configure:3439: result: yes
configure:3575: checking for an ANSI C-conforming const
configure:3650: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
conftest.c: In function 'main':
conftest.c:51:10: warning: 't' is used uninitialized in this function [-Wuninitialized]
conftest.c:73:13: warning: 'cs[0]' is used uninitialized in this function [-Wuninitialized]
configure:3656: $? = 0
configure:3671: result: yes
configure:3681: checking whether time.h and sys/time.h may both be included
configure:3711: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3717: $? = 0
configure:3732: result: yes
configure:3743: checking whether gcc -std=gnu99 supports static inline...
configure:3761: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
conftest.c:3:8: warning: type defaults to 'int' in declaration of 'f' [enabled by default]
configure:3767: $? = 0
configure:3781: result: yes
configure:3792: checking whether setjmp.h is POSIX.1 compatible
configure:3820: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3826: $? = 0
configure:3841: result: yes
configure:3843: checking whether sigsetjmp is declared
configure:3873: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3879: $? = 0
configure:3894: result: yes
configure:3910: checking whether siglongjmp is declared
configure:3940: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5
configure:3946: $? = 0
configure:3961: result: yes
configure:3993: checking Java support in R
configure:4030: result: present:
interpreter : '/usr/bin/java'
archiver : '/usr/bin/jar'
compiler : '/usr/bin/javac'
header prep.: '/usr/bin/javah'
cpp flags : '-I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux'
java libs : '-L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm'
configure:4090: checking whether JNI programs can be compiled
configure:4108: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux conftest.c -L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm >&5
conftest.c: In function 'main':
conftest.c:4:13: warning: unused variable 'o' [-Wunused-variable]
configure:4114: $? = 0
configure:4120: result: yes
configure:4142: checking JNI data types
configure:4167: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux conftest.c -L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm >&5
configure:4170: $? = 0
configure:4176: ./conftest
./conftest: error while loading shared libraries: libjvm.so: cannot open shared object file: No such file or directory
configure:4179: $? = 127
configure: program exited with status 127
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "rJava"
| #define PACKAGE_TARNAME "rjava"
| #define PACKAGE_VERSION "0.8"
| #define PACKAGE_STRING "rJava 0.8"
| #define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_STRING_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_UNISTD_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STATIC_INLINE 1
| #define HAVE_DECL_SIGSETJMP 1
| #define HAVE_DECL_SIGLONGJMP 1
| #define HAVE_POSIX_SETJMP 1
| /* end confdefs.h. */
|
| #include <jni.h>
| int main(void) {
| return (sizeof(int)==sizeof(jint) && sizeof(long)==sizeof(long) && sizeof(jbyte)==sizeof(char) && sizeof(jshort)==sizeof(short) && sizeof(jfloat)==sizeof(float) && sizeof(jdouble)==sizeof(double))?0:1;
| }
|
configure:4189: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to fix this.
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_have_decl_siglongjmp=yes
ac_cv_have_decl_sigsetjmp=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_sys_wait_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_prog_CPP='gcc -std=gnu99 -E'
ac_cv_prog_ac_ct_CC='gcc -std=gnu99'
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
r_cv_header_setjmp_posix=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
CC='gcc -std=gnu99'
CFLAGS='-fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux'
CPP='gcc -std=gnu99 -E'
CPPFLAGS=''
DEFS=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
GREP='/usr/bin/grep'
JAVA='/usr/bin/java'
JAVAC='/usr/bin/javac'
JAVAH='/usr/bin/javah'
JAVA_CPPFLAGS='-I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux'
JAVA_HOME='/usr/java/default'
JAVA_LIBS='-L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm'
LDFLAGS=''
LIBOBJS=''
LIBS=' -L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm'
LTLIBOBJS=''
OBJEXT='o'
PACKAGE_BUGREPORT='Simon.Urbanek@r-project.org'
PACKAGE_NAME='rJava'
PACKAGE_STRING='rJava 0.8'
PACKAGE_TARNAME='rjava'
PACKAGE_VERSION='0.8'
PATH_SEPARATOR=':'
R_HOME='/usr/lib/R'
SHELL='/bin/sh'
WANT_JRI_FALSE=''
WANT_JRI_TRUE=''
ac_ct_CC='gcc -std=gnu99'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/lib'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define PACKAGE_NAME "rJava"
#define PACKAGE_TARNAME "rjava"
#define PACKAGE_VERSION "0.8"
#define PACKAGE_STRING "rJava 0.8"
#define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"
#define STDC_HEADERS 1
#define HAVE_SYS_WAIT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_STRING_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_STATIC_INLINE 1
#define HAVE_DECL_SIGSETJMP 1
#define HAVE_DECL_SIGLONGJMP 1
#define HAVE_POSIX_SETJMP 1
configure: exit 1
此文件包含编译器在
运行configure，在configure出错时帮助调试。
它是由rJava configure 0.8创建的，它是
由GNU Autoconf 2.61生成。调用命令行被激活
美元/配置
## --------- ##
##站台##
## --------- ##
hostname=linux-k2a8.site
uname-m=i686
uname-r=3.4.63-2.44-桌面
uname-s=Linux
uname-v=#1 SMP抢占周三10月2日11:18:32 UTC 2013（d91a619）
/usr/bin/uname-p=i686
/bin/uname-X=未知
/箱/拱=i686
/usr/bin/arch-k=未知
/usr/convertic/getsysinfo=未知
/usr/bin/hostinfo=未知
/箱子/机器=未知
/usr/bin/oslevel=未知
/bin/宇宙=未知
路径：/home/uwe/bin
路径：/usr/local/bin
路径：/usr/bin
路径：/bin
路径：/usr/bin/X11
路径：/usr/X11R6/bin
路径：/usr/游戏
路径：/opt/kde3/bin
## ----------- ##
##核心测试##
## ----------- ##
配置：1616:加载站点脚本/usr/share/site/i686 pc linux gnu
| #!/垃圾箱/垃圾箱
|#用于配置的站点脚本。它通过$CONFIG_SITE environment varaible提供资源。
|
|#如果用户未指定libdir，请猜测正确的目标：
|#对64位双拱目标使用lib64，其余目标保留默认值。
|如果测试“$libdir”='${exec_prefix}/lib'；然后
|
|ac_配置_站点_64位_主机=无
|
|中的大小写“$host”
| "" )
|#用户未指定主机目标。
|#本机平台i386不是双拱平台。
|#无需检查兼容的子体系结构。
|ac_配置_站点_64位_主机=无
|
| ;;
|*x86_64*|*ppc64*|*s390x*）
|ac_配置_站点_64位_主机=是
| ;;
|以撒
|
|如果测试“x$ac\U配置\U站点\U 64位\U主机”=xYES；然后
|libdir='${exec_prefix}/lib64'
|fi
|fi
|
|#如果用户未指定libexecdir，请设置正确的目标：
|#或FHS或openSUSE允许前缀/libexec。让我们默认为prefix/lib。
|
|如果测试“$libexecdir”='${exec_prefix}/libexec'；然后
|libexecdir='${exec_prefix}/lib'
|fi
|
|#继续执行AC#U站点#U加载中定义的配置标准行为：
|如果测试“x$前缀”！=xNONE；然后
|ac_site_file1=$prefix/share/config.site
|ac_site_file2=$prefix/etc/config.site
|否则
|ac_site_file1=$ac_default_前缀/share/config.site
|ac_site_file2=$ac_default_前缀/etc/config.site
|fi
|对于“$ac_site_file1”$ac_site_file2”中的ac_site_文件
|做
|测试“x$ac_站点_文件”=xNONE&继续（&C）
|如果测试/dev/null！=“$ac_site_file”和&test-r“$ac_site_file”；然后
|{$as_echo”/usr/share/site/i686 pc linux gnu:${as_lineno-$lineno}：加载站点脚本$ac_site_文件“>&5
|$as_echo”/usr/share/site/i686 pc linux gnu:加载站点脚本$ac_site_文件“>&6；}
|sed的“$ac_site_file”>&5
| . “$ac\u站点\u文件”\
|| |{$as_echo”/usr/share/site/i686 pc linux gnu:${as_lineno-$lineno}：错误：在\`ac_pwd'中：“>&5
|$as_echo”/usr/share/site/i686 pc linux gnu:错误：在\`ac_pwd'：“>&2；”
|as_fn_错误$？“无法加载站点脚本$ac_站点文件
|有关详细信息，请参见\`config.log'$LINENO“5；}
|fi
|完成
配置：1847:检查gcc
配置：1874:结果：gcc-std=gnu99
配置：2112:检查C编译器版本
配置：2119:gcc-std=gnu99--version>&5
gcc（SUSE Linux）4.7.1 20120723[gcc-4_7-branch修订版189773]
版权所有（C）2012免费软件基金会。
这是自由软件；有关复制条件，请参见源。没有
担保甚至不是为了适销性或适合某一特定目的。
配置：2122:$？=0
配置：2129:gcc-std=gnu99-v>&5
使用内置规格。
收集\u GCC=GCC
COLLECT_LTO_WRAPPER=/usr/lib/gcc/i586 suse linux/4.7/LTO-WRAPPER
目标：i586 suse linux
配置：.. /配置-前缀＝/UR——信息FORDIR/URS/Stuty/Fiels-下颌骨= /Urs/Stuts/Man -LIbdir＝/Ur/LIB——LIbExcDeRy= /Ur/LIB使能语言= C、C++、Objc、FORTRAN、Obj-C++、java、ada--enable checking=release--with gxx include dir=/usr/include/c++/4.7--enable ssp--disable libssp--disable libitm--disable plugin--with bugurl=http://bugs.opensuse.org/ --使用pkgversion='SUSE Linux'--disable libgcj--disable libmudflap--with slibdir=/lib--with system zlib--enable--u_cxa_atexit--enable libstdcxx allocator=new--禁用libstdcxx pch--启用特定于版本的运行时libs--启用链接器生成id--程序后缀=-4.7--启用linux futex--不带系统libunwind--带-arch-32=i586--带tune=generic--build=i586 suse linux
线程模型：posix
gcc版本4.7.1 20120723[gcc-4_7-branch版本189773]（SUSE Linux）
配置：2132:$？=0
配置：2139:gcc-std=gnu99-V>&5
gcc:错误：无法识别的命令行选项'-V'
gcc:致命错误：没有输入文件
编译终止。
配置：2142:$？=1.
配置：2165:检查C编译器默认输出文件名
配置：2192:gcc-std=gnu99-fomit帧指针-fmessage length=0-O2-Wall-D_FORTIFY_SOURCE=2-fstack protector-funwind tables-fasynchronous unwind tables conftest.c>&5
配置：2195:$？=0
配置：2233:结果：a.out
configure:2250:检查C编译器是否工作
配置：2260:./a.out
配置：2263:$？=0
配置：2280:re