Java 计算.maf文件中发生突变的次数
我在计算MAF文件中的突变数。我最初是用python编写这段代码的,它工作得非常好,但当我将其翻译成Java时,它就停止了工作。在输出文件中,突变数始终为一。我做错了什么Java 计算.maf文件中发生突变的次数,java,python,bioinformatics,Java,Python,Bioinformatics,我在计算MAF文件中的突变数。我最初是用python编写这段代码的,它工作得非常好,但当我将其翻译成Java时,它就停止了工作。在输出文件中,突变数始终为一。我做错了什么 package dev.suns.bioinformatics; import java.io.BufferedReader; import java.io.FileReader; import java.io.PrintWriter; public class Main { static String file
package dev.suns.bioinformatics;
import java.io.BufferedReader;
import java.io.FileReader;
import java.io.PrintWriter;
public class Main {
static String filePath = "C:/Users/Matthew/Bioinformatics/Data Files/DLBC.maf";
static String fileName = "DLBC_Info.txt";
public static void main(String[] args){
createFile(filePath, fileName);
}
public static void createFile(String filePath, String fileName){
BufferedReader br = null;
String line = "";
String delimiter = "\t";
String geneSymbol = "";
String newGene = "";
int count;
try {
PrintWriter writer = new PrintWriter(fileName);
br = new BufferedReader(new FileReader(filePath));
writer.println("Gene" + "\t" + "Mutations" + "\n");
br.readLine();
while ((line = br.readLine()) != null){
String[] splitFile = line.split(delimiter);
newGene = splitFile[0];
if(geneSymbol == ""){
geneSymbol = newGene;
}
else if(newGene == geneSymbol){
#This is here I am having trouble. I have this if-statement to check if the gene appears more than once in the .maf file, but nothing is ever entering this.
count++;
}
else{
count++;
writer.println(geneSymbol + "\t" + count + "\n");
geneSymbol = newGene;
count=0;
}
}
writer.close();
}catch(Exception e){
e.printStackTrace();
}
}
}
下面是文件的前几行内容
基因突变
A1CF 1
A2M1
A2M1
A2ML1
A4Alt 1
AADAC 1
AADACL3 1
AAED1
AAGAB 1
AAGAB 1
AARD 1
AARS21
AARS21
AARS21在java中,您需要使用equals函数比较字符串。这应该行得通-
else if(newGene.equals(geneSymbol)){
#This is here I am having trouble. I have this if-statement to check if the gene appears more than once in the .maf file, but nothing is ever entering this.
count++;
}
“==”检查引用。它们是否是相同的字符串对象。为了比较字符串的值,需要使用equals()函数。在java中,需要使用equals函数比较字符串。这应该行得通-
else if(newGene.equals(geneSymbol)){
#This is here I am having trouble. I have this if-statement to check if the gene appears more than once in the .maf file, but nothing is ever entering this.
count++;
}
“==”检查引用。它们是否是相同的字符串对象。为了比较字符串的值,需要使用equals()函数。如果有效,请接受答案。单击向下箭头下方的右按钮。所以大家都很清楚这个问题已经得到了回答。哦,对不起,我是StackOverflow的新手。如果答案有效,请接受。单击向下箭头下方的右按钮。所以大家都很清楚这个问题已经得到了回答。对不起,我是新来的