在python中使用适当的缩进剥离行
输入: 我必须去掉最后两行,然后给它分配两个数组,读取每个字符并获得输出,如下图所示 剥离后,线条应采用以下格式:在python中使用适当的缩进剥离行,python,arrays,string,Python,Arrays,String,输入: 我必须去掉最后两行,然后给它分配两个数组,读取每个字符并获得输出,如下图所示 剥离后,线条应采用以下格式: $target: ENSG00000097007|ABL1 length: 3075 miRNA : hsa-miR-203 length: 22 mfe: -30.5 kcal/mol p-value: 0.606919 position: 2745 target 5' C G C 3' GUGGUCCUGGAC
$target: ENSG00000097007|ABL1
length: 3075
miRNA : hsa-miR-203
length: 22
mfe: -30.5 kcal/mol
p-value: 0.606919
position: 2745
target 5' C G C 3'
GUGGUCCUGGACA CAC
CACCAGGAUUUGU GUG
miRNA 3' GAU AAA 5'
如果行字符是从第1行读取的,那么它应该用小写字母打印,如果它是从第二行读取的,那么它应该用大写字母打印
程序的最终输出应为
“Gaucacaguauguaaagug”
我们试图读取它的代码并没有像在输入中看到的那样将行完全对齐
下面是我们使用的代码:
CACCAGGAUUUGU GUG
GAU AAA
对问题的进一步输入
import fileinput
import sys
from sys import argv
script, filename = argv
file = open(filename)
og1 = "AGUUCCUUUGUUUUGGUGACUG"
pattern = " "
pattern1 = "miRNA 3'"
file = open(filename)
for line in file:
if line.startswith(pattern):
n = file.next()
# print n[9:],# bound mirna
for i in range(0, len(og1)):
print og1[i],
print "\n"
for j in range(0,len(n)):
print n[j],'
我将按行分割,抓取最后两行,然后在压缩在一起的两行上迭代,并使用非
“
”的字符
可能更安全的结果是返回:
def combinebases(base_data):
lines = base_data.splitlines()[-2:]
output = list()
lines[0] = lines[0].lower()
for ch1, ch2 in zip(*lines):
output.append(max(ch1, ch2))
return ''.join(output[10:-4])
你能解释一下这一行的确切意思吗?打印拆分2[0]+拆分1[0]。lower()+split2[1]+split1[1]。lower()我是python的新手,无法获取代码,我想说的是,所有的输入都不一样。。和其他情况一样,输入是完全不同的。因此,我需要知道如何打印,如果它从第一行读取意味着它是小写的,如果从第二行读取意味着它是大写的,并且在单个文件的最终输出中,如上@AshokaLella@ramko,split()函数基于空格分割线。对于最后一行拆分1=[“caccaggauugu”,“GUG”]。对于最后一行split2=[“miRNA”,“3'”,“GAU”,“AAA”,“5'”。@ramko,如果您可以粘贴输入文件的更多内容。我可以进一步概括代码,并添加有问题的输入
file = open(filename)
for segment in file.read().split("\n\ntarget"):
interested_lines = segment.split('\n')[-3:-1] #Fetch last two lines
split1 = interested_lines[0].split()
split2 = interested_lines[1].split()[2:-1]
for i in range(0,len(split1)<len(split2)):
split1.append("")
req = ""
for i in range(0,len(split2)):
req += split2[i]+split1[i].lower()
for j in range(i+1,len(split1)):
req += split1[j]
print req
AguguuCAAucccaGAGucccu
CgugUcggggGCAgggaggga
AguccuugACggaAagagaggu
AuugguuACAcgUCUGAUGACA
UgagucaUUaccauugCCAAA
def combinebases(base_data):
lines = base_data.splitlines()[-2:]
output = list()
lines[0] = lines[0].lower()
for ch1, ch2 in zip(*lines):
output.append(max(ch1, ch2))
return ''.join(output[10:-4])
return re.search("(?<=miRNA 3' )[augc]+", ''.join(output), re.I).group()
>>> txt = """$target: ENSG00000097007|ABL1
length: 3075
miRNA : hsa-miR-203
length: 22
mfe: -30.5 kcal/mol
p-value: 0.606919
position: 2745
target 5' C G C 3'
GUGGUCCUGGACA CAC
CACCAGGAUUUGU GUG
miRNA 3' GAU AAA 5'"""
>>> combinebases(txt)
'GAUcaccaggauuuguAAAgug'