格伦德错误(mesa libGL/GLU)安装;rgl";Centos6.7上的软件包

格伦德错误(mesa libGL/GLU)安装;rgl";Centos6.7上的软件包,r,centos6,bioconductor,rgl,mesa,R,Centos6,Bioconductor,Rgl,Mesa,我试图在CentOS 6.7上安装“rgl”,但无法使其正常工作。 看到了许多类似的问题,但没有一个解决方案对我有效 我的系统: Centos 6.7 R版本3.2.3(2015-12-10)-“木制圣诞树” 平台:x86_64-redhat-linux-gnu(64位) 注意:随着问题的发展,您可以直接跳到更新部分。当问题解决时,我将重新格式化整个帖子 错误(使用bioconductor) 使用相同的问题 install.packages("rgl", repos="http://R-Forg

我试图在CentOS 6.7上安装“rgl”,但无法使其正常工作。
看到了许多类似的问题,但没有一个解决方案对我有效

我的系统:

Centos 6.7
R版本3.2.3(2015-12-10)-“木制圣诞树”
平台:x86_64-redhat-linux-gnu(64位)

注意:随着问题的发展,您可以直接跳到更新部分。当问题解决时,我将重新格式化整个帖子

错误(使用bioconductor)

使用相同的问题

install.packages("rgl", repos="http://R-Forge.R-project.org")
我在这里尝试了解决方案

这是我安装的X11库:

>yum list installed |grep X11  
libX11.x86_64                          1.6.0-6.el6                      @base   
libX11-common.noarch                   1.6.0-6.el6                      @base   
libX11-devel.x86_64                    1.6.0-6.el6                      @base 
但它仍然失败

我还安装了devtools和导入的库,它没有修复这个问题

source("https://bioconductor.org/biocLite.R")
library(devtools)
biocLite("rgl")
... same issue
花了几个小时,什么都没用

注意:我成功地在我的ubuntu上安装了它,但是没有办法让它在centos6.7(工作站)上工作

更新
查找缺少libpng-devel(已经有、libpng、libpng10、libpng10-devel)

错误改变了 然后我添加了更多缺少的库

sudo yum install mesa-libGL
sudo yum install mesa-libGL-devel
sudo yum install mesa-libGLU
sudo yum install mesa-libGLU-devel
错误改变了 我仍然有问题

* installing *source* package ‘rgl’ ...
** package ‘rgl’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -m64 -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -m64 -std=gnu99 accepts -g... yes
checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E
checking for gcc... (cached) gcc -m64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -m64 -std=gnu99 accepts -g... (cached) yes
checking for gcc -m64 -std=gnu99 option to accept ISO C89... (cached) none needed
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -m64 -std=gnu99 accepts -fvisibility... yes
checking whether  accepts -fvisibility... no
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... libraries , headers 
checking GL/gl.h usability... yes
checking GL/gl.h presence... yes
checking for GL/gl.h... yes
checking GL/glu.h usability... yes
checking GL/glu.h presence... yes
checking for GL/glu.h... yes
checking for glEnd in -lGL... no
configure: error: missing required library GL
ERROR: configuration failed for package ‘rgl’
现在如果我找到libGL

locate libGL
/usr/lib/libGL.la
/usr/lib/libGL.so
/usr/lib/libGL.so.1
/usr/lib/libGL.so.361.28
/usr/lib/libGLESv1_CM.so
/usr/lib/libGLESv1_CM.so.1
/usr/lib/libGLESv1_CM_nvidia.so.1
/usr/lib/libGLESv1_CM_nvidia.so.361.28
/usr/lib/libGLESv2.so
/usr/lib/libGLESv2.so.2
/usr/lib/libGLESv2_nvidia.so.2
/usr/lib/libGLESv2_nvidia.so.361.28
/usr/lib/libGLX_indirect.so.0
/usr/lib/libGLX_nvidia.so.0
/usr/lib/libGLX_nvidia.so.361.28
/usr/lib/libGLdispatch.so.0
/usr/lib64/libGL.la
/usr/lib64/libGL.so
/usr/lib64/libGL.so.1
/usr/lib64/libGL.so.361.28
/usr/lib64/libGLESv1_CM.so
/usr/lib64/libGLESv1_CM.so.1
/usr/lib64/libGLESv1_CM_nvidia.so.1
/usr/lib64/libGLESv1_CM_nvidia.so.361.28
/usr/lib64/libGLESv2.so
/usr/lib64/libGLESv2.so.2
/usr/lib64/libGLESv2_nvidia.so.2
/usr/lib64/libGLESv2_nvidia.so.361.28
/usr/lib64/libGLU.so
/usr/lib64/libGLU.so.1
/usr/lib64/libGLU.so.1.3.1
/usr/lib64/libGLX_indirect.so.0
/usr/lib64/libGLX_nvidia.so.0
/usr/lib64/libGLX_nvidia.so.361.28
/usr/lib64/libGLdispatch.so.0
/usr/lib64/libGLw.so
/usr/lib64/libGLw.so.1
/usr/lib64/libGLw.so.1.0.0
/usr/share/doc/mesa-libGLw-6.5.1
/usr/share/doc/mesa-libGLw-6.5.1/README
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/changed_by
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/checksum_data
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/checksum_type
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/command_line
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/from_repo
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/from_repo_revision
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/from_repo_timestamp
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/installed_by
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/reason
/var/lib/yum/yumdb/m/010c511f597ab7af9a62cb69e3efa97a86d8aed8-mesa-libGLU-10.4.3-1.el6-x86_64/releasever
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/checksum_data
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/checksum_type
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/command_line
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/from_repo
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/from_repo_revision
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/from_repo_timestamp
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/installed_by
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/reason
/var/lib/yum/yumdb/m/a38f4280f482ab6f663312b4971b2355c27dedc6-mesa-libGLw-6.5.1-10.el6-x86_64/releasever
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/changed_by
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/checksum_data
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/checksum_type
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/command_line
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/from_repo
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/from_repo_revision
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/from_repo_timestamp
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/installed_by
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/reason
/var/lib/yum/yumdb/m/aa6576ce41dd030b88b08c1a166b3a367f685972-mesa-libGL-10.4.3-1.el6-x86_64/releasever
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/checksum_data
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/checksum_type
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/command_line
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/from_repo
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/from_repo_revision
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/from_repo_timestamp
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/installed_by
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/reason
/var/lib/yum/yumdb/m/adc9d6749b6c635c773e81565cd5d39b0ab3b851-mesa-libGL-devel-10.4.3-1.el6-x86_64/releasever
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/checksum_data
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/checksum_type
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/command_line
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/from_repo
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/from_repo_revision
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/from_repo_timestamp
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/installed_by
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/reason
/var/lib/yum/yumdb/m/dc1a62e08fc366e4a97e261f5dc94d04019e1e68-mesa-libGLU-devel-10.4.3-1.el6-x86_64/releasever
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/checksum_data
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/checksum_type
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/command_line
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/from_repo
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/from_repo_revision
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/from_repo_timestamp
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/installed_by
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/reason
/var/lib/yum/yumdb/m/edbad91b2990d0cab1c3e8a029bcd7129ce3a1e5-mesa-libGLw-devel-6.5.1-10.el6-x86_64/releasever
更新2:
在@MartinMorgan help之后,我下载了ligGL包并手动配置了它

./configure
wget https://xcb.freedesktop.org/dist/libxcb-1.9.3.tar.gz
wget https://xcb.freedesktop.org/dist/xcb-proto-1.9.tar.gz
给我

configure: error: Direct rendering requires libdrm >= 2.4.38
所以我必须安装libdrm-devel

sudo yum install libdrm-devel
然后再次,错误更新

configure: error: DRI3 requires xcb >= 1.9.3
但centos安装了1.9.1

我决定手工做

./configure
wget https://xcb.freedesktop.org/dist/libxcb-1.9.3.tar.gz
wget https://xcb.freedesktop.org/dist/xcb-proto-1.9.tar.gz
但是当我点击configure时,它告诉我它需要xcb proto 1.9
适用于centOS6的Yum存储库仅提供1.8

我又一次手动去了

./configure
wget https://xcb.freedesktop.org/dist/libxcb-1.9.3.tar.gz
wget https://xcb.freedesktop.org/dist/xcb-proto-1.9.tar.gz
但是当我安装它并返回到libxcb-1.9.3时,它没有检测到安装了xcbproto

然而,如果我从repositor安装1.8 xcb proto,它会检测到它并告诉我它已过时

通过查看xcb proto 1.8何时安装

rpm -ql xcb-proto
输出为

/usr/lib/python2.6/site-packages/xcbgen
/usr/lib/python2.6/site-packages/xcbgen/__init__.py
/usr/lib/python2.6/site-packages/xcbgen/__init__.pyc
/usr/lib/python2.6/site-packages/xcbgen/__init__.pyo
/usr/lib/python2.6/site-packages/xcbgen/error.py
/usr/lib/python2.6/site-packages/xcbgen/error.pyc
/usr/lib/python2.6/site-packages/xcbgen/error.pyo
/usr/lib/python2.6/site-packages/xcbgen/expr.py
/usr/lib/python2.6/site-packages/xcbgen/expr.pyc
/usr/lib/python2.6/site-packages/xcbgen/expr.pyo
/usr/lib/python2.6/site-packages/xcbgen/matcher.py
/usr/lib/python2.6/site-packages/xcbgen/matcher.pyc
/usr/lib/python2.6/site-packages/xcbgen/matcher.pyo
/usr/lib/python2.6/site-packages/xcbgen/state.py
/usr/lib/python2.6/site-packages/xcbgen/state.pyc
/usr/lib/python2.6/site-packages/xcbgen/state.pyo
/usr/lib/python2.6/site-packages/xcbgen/xtypes.py
/usr/lib/python2.6/site-packages/xcbgen/xtypes.pyc
/usr/lib/python2.6/site-packages/xcbgen/xtypes.pyo
/usr/share/doc/xcb-proto-1.8
/usr/share/doc/xcb-proto-1.8/COPYING
/usr/share/doc/xcb-proto-1.8/NEWS
/usr/share/doc/xcb-proto-1.8/README
/usr/share/doc/xcb-proto-1.8/TODO
/usr/share/doc/xcb-proto-1.8/xml-xcb.txt
/usr/share/pkgconfig/xcb-proto.pc
/usr/share/xcb
/usr/share/xcb/bigreq.xml
/usr/share/xcb/composite.xml
/usr/share/xcb/damage.xml
/usr/share/xcb/dpms.xml
/usr/share/xcb/dri2.xml
/usr/share/xcb/ge.xml
/usr/share/xcb/glx.xml
/usr/share/xcb/randr.xml
/usr/share/xcb/record.xml
/usr/share/xcb/render.xml
/usr/share/xcb/res.xml
/usr/share/xcb/screensaver.xml
/usr/share/xcb/shape.xml
/usr/share/xcb/shm.xml
/usr/share/xcb/sync.xml
/usr/share/xcb/xc_misc.xml
/usr/share/xcb/xcb.xsd
/usr/share/xcb/xevie.xml
/usr/share/xcb/xf86dri.xml
/usr/share/xcb/xf86vidmode.xml
/usr/share/xcb/xfixes.xml
/usr/share/xcb/xinerama.xml
/usr/share/xcb/xinput.xml
/usr/share/xcb/xkb.xml
/usr/share/xcb/xprint.xml
/usr/share/xcb/xproto.xml
/usr/share/xcb/xselinux.xml
/usr/share/xcb/xtest.xml
/usr/share/xcb/xv.xml
/usr/share/xcb/xvmc.xml
而xcb协议使用python 2.7

我不太明白系统如何查找由yum安装的包与从tarball安装包时如何查找包之间的区别。

这是我用来在6.7(和7.x)上获取rgl的包


如果xquartz丢失,请检查可能出现的消息我想quartz是用于macOS的,我会查看一下它可能有助于在
configure:error
之前再提供几行代码,以指示configure正在做什么来尝试查找X11。如果没有安装,您可以查找libGL--
查找libGL
,那就意味着找到合适的软件包。如果安装了,则可能位于未知位置;查看您的操作系统ldconfig和LD_LIBRARY_路径谢谢您的帮助@MartinM,我更新了感谢您