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R p、 关联函数中的调整可以';不能更改为p值_R - Fatal编程技术网

R p、 关联函数中的调整可以';不能更改为p值

R p、 关联函数中的调整可以';不能更改为p值,r,R,我如何用正常的PV值替换p.adj.threshold并在热图中绘制它?我想要的是绘制p值,而不是p y <- log10(abund) x <- as.matrix(meta) correlations <- associate(x, y, method = "pearson", mode = "matrix", p.adj.threshold = 0.05, n.signif = 1) correlation.table <-

我如何用正常的PV值替换p.adj.threshold并在热图中绘制它?我想要的是绘制p值,而不是p

y <- log10(abund) 
x <- as.matrix(meta)
correlations <- associate(x, y, method = "pearson", mode = "matrix", p.adj.threshold = 0.05, n.signif = 1)
correlation.table <- associate(x, y, method = "pearson", mode = "table", p.adj.threshold = 0.05, n.signif = 1) 
p <- heat(correlation.table, "X1", "X2", fill = "Correlation", star ="p.adj", p.adj.threshold =0.05)  
print(p)

y有多个包具有
关联功能。你在使用哪一种?在微生物组包装中进行关联由于
associate
heat
都在
microbiom
包装中,请尝试联系包装维护者:“维护者(“微生物组”)—Leo Lahti。