R 如何在一个闪亮的应用程序中汇总来自渲染函数外部的反应数据?
对于这个特别的闪亮的例子,我尝试应用一个循环模型,并在ggplot和汇总表中显示和汇总它。在尝试添加反应式“刷图”功能之前,这是很简单的。每个数据点代表一个日期,选择图的点是能够丢弃不需要的日期。据我所知,这要求过滤和模型拟合在R 如何在一个闪亮的应用程序中汇总来自渲染函数外部的反应数据?,r,ggplot2,shiny,non-linear-regression,shinyapps,R,Ggplot2,Shiny,Non Linear Regression,Shinyapps,对于这个特别的闪亮的例子,我尝试应用一个循环模型,并在ggplot和汇总表中显示和汇总它。在尝试添加反应式“刷图”功能之前,这是很简单的。每个数据点代表一个日期,选择图的点是能够丢弃不需要的日期。据我所知,这要求过滤和模型拟合在渲染图中,这会导致复杂(无法找到数据/模型)尝试调用过滤后的数据和循环模型的统计输出(在函数外部和/或在另一个反应函数内)。这会产生错误:找不到对象“k_circ.lm”,因此我的问题是: 如何从renderPlot函数中读取过滤后的数据 到汇总表矩阵 我如何同样地添加k
渲染图
中,这会导致复杂(无法找到数据/模型)尝试调用过滤后的数据和循环模型的统计输出(在函数外部和/或在另一个反应函数内)。这会产生错误:找不到对象“k_circ.lm”
,因此我的问题是:
renderPlot
函数中读取过滤后的数据
到汇总表
矩阵k_circ.lm
中的拟合模型值和残差library(dplyr) # For data manipulation
library(ggplot2) # For drawing plots
library(shiny) # For running the app
library(plotly) # For data manipulation
library(circular) # For Circular regressions
library(gridExtra)
# Define UI ----
ui <- fluidPage(
# App title ----
titlePanel("Circular Brushplot Demo"),
# Sidebar layout with input and output definitions ----
sidebarLayout(
sidebarPanel(
actionButton("exclude_toggle", "Toggle points"),
actionButton("exclude_reset", "Reset")
),
# Main panel for displaying outputs ----
mainPanel(
#reactive plot output with point and 'brush' selection
fluidRow(plotOutput("k", height = 400,
click = "k_click",
brush = brushOpts(
id = "k_brush" ))),
plotOutput("s", height = 400)
)
)
)
# Define server logic
server <- function(input, output) {
psideg <- c(356,97,211,232,343,292,157,302,335,302,324,85,324,340,157,238,254,146,232,122,329)
thetadeg <- c(119,162,221,259,270,29,97,292,40,313,94,45,47,108,221,270,119,248,270,45,23)
## Data in radians then to "circular format"
psirad <- psideg*2*pi/360
thetarad <- thetadeg*2*pi/360
cpsirad <- circular(psirad)
cthetarad <- circular(thetarad)
cdat <- data.frame(cpsirad, cthetarad)
###### reactive brush plot ########
# For storing which rows have been excluded
vals <- reactiveValues(
keeprows = rep(TRUE, nrow(cdat)))
output$k <- renderPlot({
# Plot the kept and excluded points as two separate data sets
keep <- cdat[ vals$keeprows, , drop = FALSE]
exclude <- cdat[!vals$keeprows, , drop = FALSE]
## Fits circular model specifically for 'keeprows' of selected data
k_circlm <- lm.circular(type = "c-c", y = keep$cthetarad, x = keep$cpsirad, order = 1)
k_circlm
ggplot(keep, aes(cthetarad, cpsirad)) +
geom_point(aes(cthetarad, cpsirad, colour = keep$Vmag, size = 5))+
scale_colour_gradient(low ="blue", high = "red")+
geom_smooth(method = lm, fullrange = TRUE, color = "black") +
geom_point(data = exclude, shape = 13, size = 5, fill = NA, color = "black", alpha = 0.25) +
annotate("text", x = min(keep$cthetarad), y = Inf, hjust = .1, vjust = 1,
label = paste0("p value 1 = ", round(k_circlm$p.values[1], 2)), size = 7)+
annotate("text", x = min(keep$cthetarad), y = Inf, hjust = .1, vjust = 2.5,
label = paste0("p value 2 = ", round(k_circlm$p.values[2], 2)), size = 7)+
annotate("text", x = min(keep$cthetarad), y = Inf, hjust = .1, vjust = 4,
label = paste0("rho = ", round(k_circlm$rho, 2)), size = 7)+
xlab("Lighthouse Direction (radians)")+ ylab("ADCP site direction (radians)")+
theme(axis.title.x = element_text(size = 20), axis.title.y = element_text(size = 20))
})
# Toggle points that are clicked
observeEvent(input$k_click, {
res <- nearPoints(cdat, input$k_click, allRows = TRUE)
vals$keeprows <- xor(vals$keeprows, res$selected_)})
# Toggle points that are brushed, when button is clicked
observeEvent(input$exclude_toggle, {
res <- brushedPoints(cdat, input$k_brush, allRows = TRUE)
vals$keeprows <- xor(vals$keeprows, res$selected_)})
# Reset all points
observeEvent(input$exclude_reset, {
vals$keeprows <- rep(TRUE, nrow(cdat))})
output$s <- renderPlot({
# Create Summary table
summarytable <- data.frame(matrix(ncol = 4, nrow = nrow(keep)))
colnames(summarytable) <- c( "Psi_dir", "Theta_dir", "Fitted_values", "Residuals")
# Un-comment lines below to read from non-reactive data for working summary table
#summarytable$Psi_dir <- round(cdat$cpsirad, 2)
#summarytable$Theta_dir <- round(cdat$cthetarad, 2)
# attempting to pull from circlm within render plot
# comment out for summarytable to work
summarytable$Psi_dir <- round(keep$cpsirad, 2)
summarytable$Theta_dir <- round(keep$cthetarad, 2)
summarytable$Fitted_values <- round(k_circ.lm$fitted)
summarytable$Residuals <- round(k_circ.lm$residuals)
# outputing table with minimal formatting
summarytable <-na.omit(summarytable)
t <- tableGrob(summarytable)
Q <- grid.arrange(t, nrow = 1)
Q
}
)
}
shinyApp(ui = ui, server = server)
library(dplyr)#用于数据操作
图库(ggplot2)#用于绘制绘图
库(闪亮)#用于运行应用程序
库(plotly)#用于数据操作
图书馆(循环)#用于循环回归
图书馆(gridExtra)
#定义用户界面----
ui这里有一些想法-但是有多种方法来处理这个问题,在进一步处理这个问题之后,您可能希望重新构造服务器的功能
首先,您可能需要一个reactive
表达式,该表达式将根据vals$keeprows
更新您的模型,因为它会随着您的单击而更改。然后,您可以从绘图和数据表访问此表达式的模型结果
以下是一个例子:
fit_model <- reactive({
## Keep and exclude based on reactive value keeprows
keep = cdat[ vals$keeprows, , drop = FALSE]
exclude = cdat[!vals$keeprows, , drop = FALSE]
## Fits circular model specifically for 'keeprows' of selected data
k_circlm <- lm.circular(type = "c-c", y = keep$cthetarad, x = keep$cpsirad, order = 1)
## Returns list of items including what to keep, exclude, and model
list(k_circlm = k_circlm, keep = keep, exclude = exclude)
})
并且可以从表中访问相同的内容(尽管您有asrenderPlot
?):
output$s谢谢您的帮助,功能不错!您的回答也是正确的,因为我想使用nrow(keep)
,所以我会相应地更改它。output$s
的renderPlot
可能不是最好的方法,但与我试图为其构建可复制演示的大型应用程序最为相似。。。您如何建议以不同的方式进行渲染?
output$k <- renderPlot({
exclude <- fit_model()[["exclude"]]
keep <- fit_model()[["keep"]]
k_circlm <- fit_model()[["k_circlm"]]
ggplot(keep, aes(cthetarad, cpsirad)) +
...
output$s <- renderPlot({
keep = fit_model()[["keep"]]
k_circ.lm <- fit_model()[["k_circlm"]]
# Create Summary table
summarytable <- data.frame(matrix(ncol = 4, nrow = nrow(keep)))
...