Bash 调用singularity shell后在脚本中运行下一个命令

我有一个shell脚本，里面有多个奇点命令

myscript.sh

#!/bin/sh/

singularity shell -B /home/user/Desktop/ /home/user/image/some_image.simg
/home/user/miniconda/activate my_env
cd /app/app_folder/scripts
ls -ash

#!/bin/sh

singularity exec -B /home/user/Desktop/ /home/user/image/some_image.simg bash newscript.sh

当我运行脚本时，它会在调用shell后被卡住

singularity>

---

但是，我希望后续命令在调用的shell中运行。如何执行此操作？

您正在连接到shell脚本中的交互式命令shell，只需执行命令即可

singularity exec ...

---

如果要连接到shell脚本中的交互式命令shell，只需执行命令即可

singularity exec ...

---

因此基本上我必须用

exec

替换

shell

，并将后续命令保存在不同的可执行bash脚本

newscript.sh

中，其中包含

#!/bin/sh

/home/user/miniconda/activate my_env
cd /app/app_folder/scripts
ls -ash

然后运行

myscript.sh

#!/bin/sh/

singularity shell -B /home/user/Desktop/ /home/user/image/some_image.simg
/home/user/miniconda/activate my_env
cd /app/app_folder/scripts
ls -ash

#!/bin/sh

singularity exec -B /home/user/Desktop/ /home/user/image/some_image.simg bash newscript.sh

---

在

myscript.sh

中调用singularity shell后，此方法将在singularity shell中运行

newscript.sh

，因此基本上我必须将

shell

替换为

exec

，并将后续命令保存在另一个包含

#!/bin/sh/

singularity shell -B /home/user/Desktop/ /home/user/image/some_image.simg
/home/user/miniconda/activate my_env
cd /app/app_folder/scripts
ls -ash

#!/bin/sh

/home/user/miniconda/activate my_env
cd /app/app_folder/scripts
ls -ash

#!/bin/sh

singularity exec -B /home/user/Desktop/ /home/user/image/some_image.simg bash newscript.sh

然后运行

myscript.sh

#!/bin/sh/

singularity shell -B /home/user/Desktop/ /home/user/image/some_image.simg
/home/user/miniconda/activate my_env
cd /app/app_folder/scripts
ls -ash

#!/bin/sh

singularity exec -B /home/user/Desktop/ /home/user/image/some_image.simg bash newscript.sh

---

在

myscript.sh

中调用singularity shell后，此方法将在singularity shell中运行

newscript.sh

，这是正确的，但该链接确实很旧。当前版本的链接是：旧版本的文档可在Thank you@tsnowlanth获得。这是正确的，但该链接确实很旧。当前版本的链接为：和旧版本的文档可从Thank you@tsnowlan获得

#!/bin/sh/

singularity shell -B /home/user/Desktop/ /home/user/image/some_image.simg
/home/user/miniconda/activate my_env
cd /app/app_folder/scripts
ls -ash

#!/bin/sh

singularity exec -B /home/user/Desktop/ /home/user/image/some_image.simg bash newscript.sh