在分布式Dask中处理300MB、有30M记录的字符串数据转换

在分布式Dask中处理300MB、有30M记录的字符串数据转换,dask,dask-distributed,dask-delayed,dask-dataframe,Dask,Dask Distributed,Dask Delayed,Dask Dataframe,正在节点1上启动Dask计划程序(4CPU,8GB): Dask调度程序:Dask调度程序--主机0.0.0.0--端口8786 在节点2(8CPU,32GB)和节点3(8CPU,32GB)上启动工作线程: Dask工作人员: dask工作者tcp://http://xxx.xxx.xxx.xxx:8786 --保姆端口3000:3004--工作端口3100:3104--仪表板地址:8789 这是我的原型,编辑了some\u private\u processing和some\u process

正在节点1上启动Dask计划程序(4CPU,8GB):

Dask调度程序:
Dask调度程序--主机0.0.0.0--端口8786

在节点2(8CPU,32GB)和节点3(8CPU,32GB)上启动工作线程: Dask工作人员:

dask工作者tcp://http://xxx.xxx.xxx.xxx:8786 --保姆端口3000:3004--工作端口3100:3104--仪表板地址:8789

这是我的原型,编辑了
some\u private\u processing
some\u processing
方法:

import glob
import pandas as pd

from dask.distributed import Client

N_CORES = 16
THREADS_PER_WORKER = 2
dask_cluster = Client(
    '127.0.0.1:8786'
)

def get_clean_str1(str1):
    ret_tuple = None, False, True, None, False
    if not str1:
        return ret_tuple
    if string_validators(str1) is not True:
        return ret_tuple

    data = some_processing(str1)
    match_flag = False
    if str1 == data.get('formated_str1'):
        match_flag = True

    private_data = some_private_processing(str1)
    private_match_flag = False
    if str1 == private_data.get('formated_private_str1'):
        private_match_flag = True
    ret_tuple = str1, match_flag, False, private_str1, private_match_flag
    return ret_tuple

files = [
    'part-00000-abcd.gz.parquet',
    'part-00001-abcd.gz.parquet',
    'part-00002-abcd.gz.parquet',
]
print('Starting...')
for idx, each_file in enumerate(files):
    dask_cluster.restart()
    print(f'Processing file {idx}: {each_file}')
    all_str1s_df = pd.read_parquet(
        each_file,
        engine='pyarrow'
    )
    print(f'Read file {idx}: {each_file}')
    all_str1s_df = dd.from_pandas(all_str1s_df, npartitions=16000)
    print(f'Starting file processing {idx}: {each_file}')
    str1_res_tuple = all_str1s_df.map_partitions(
        lambda part: part.apply(
            lambda x: get_clean_str1(x['str1']),
            axis=1
        ),
        meta=tuple
    )

    (clean_str1,
     match_flag,
     bad_str1_flag,
     private_str1,
     private_match_flag) = zip(*str1_res_tuple)

    all_str1s_df = all_str1s_df.assign(
        clean_str1=pd.Series(clean_str1)
    )
    all_str1s_df = all_str1s_df.assign(
        match_flag=pd.Series(match_flag)
    )
    all_str1s_df = all_str1s_df.assign(
        bad_str1_flag=pd.Series(bad_str1_flag)
    )
    all_str1s_df = all_str1s_df.assign(
        private_str1=pd.Series(private_str1)
    )
    all_str1s_df = all_str1s_df.assign(
        private_match_flag=pd.Series(private_match_flag)
    )
    all_str1s_df = all_str1s_df[
        all_str1s_df['match_flag'] == False
    ]
    all_str1s_df = all_str1s_df.repartition(npartitions=200)
    all_str1s_df.to_csv(
        f'results-str1s-{idx}-*.csv'
    )
    print(f'Finished file {idx}: {each_file}')
这个处理过程需要8个多小时,我看到所有数据只在Node2或Node3上的一个节点上处理,而不是在Node2和Node3上处理


需要帮助才能理解这些见解,了解我在哪里做错了,使这个简单的数据转换运行了8个多小时,但仍未完成。

超时时间增加,内存增加。在那之后,它开始工作,没有失败和悬挂

timeouts:
  connect: 180s          # time before connecting fails
  tcp: 180s              # time before calling an unresponsive connection dead