我如何使用Biopython找到蛋白质的核苷酸序列?

我如何使用Biopython找到蛋白质的核苷酸序列?,python,bioinformatics,biopython,ncbi,rentrez,Python,Bioinformatics,Biopython,Ncbi,Rentrez,我有一些蛋白质,我想找到它们相应的核苷酸序列。我还有发现这种蛋白质的基因组。在基因组中,我找到了蛋白质对应的基因ID。但是,我很难获得带有基因ID的核苷酸序列。我尝试使用Entrez Efetch: Entrez.email = "dddd@gmail.com" with open("genome.gb", "w") as out_handle: request = Entrez.efetch(db="gene", id="2703488", rettype="gb", retmode=

我有一些蛋白质,我想找到它们相应的核苷酸序列。我还有发现这种蛋白质的基因组。在基因组中,我找到了蛋白质对应的基因ID。但是,我很难获得带有基因ID的核苷酸序列。我尝试使用Entrez Efetch:

Entrez.email = "dddd@gmail.com"
with open("genome.gb", "w") as out_handle:
    request = Entrez.efetch(db="gene", id="2703488", rettype="gb", retmode="text")
    out_handle.write(request.read())
    request.close()
但这只会返回以下内容:

1. G
tail component [Escherichia virus Lambda]
Other Aliases: lambdap14
Other Designations: tail component
Annotation:  NC_001416.1 (9711..10133)
ID: 2703488

用Efetch可以得到实际的核苷酸序列吗?提前谢谢

您可以使用注释:行中的信息从NCBI核苷酸获得序列:


您可以使用注释:行中的信息从NCBI核苷酸获得序列:

>>> from Bio import Entrez, SeqIO
>>> Entrez.email = ''
>>> request = Entrez.efetch(db="nuccore", id="NC_001416.1", rettype="fasta", seq_start="9711", seq_stop="10133")
>>> seq_record = SeqIO.read(request, "fasta")
>>> seq_record
SeqRecord(seq=Seq('ATGTTCCTGAAAACCGAATCATTTGAACATAACGGTGTGACCGTCACGCTTTCT...TGA', SingleLetterAlphabet()), id='NC_001416.1:9711-10133', name='NC_001416.1:9711-10133', description='NC_001416.1:9711-10133 Enterobacteria phage lambda, complete genome', dbxrefs=[])
>>> print(seq_record.seq)
ATGTTCCTGAAAACCGAATCATTTGAACATAACGGTGTGACCGTCACGCTTTCTGAACTGTCAGCCCTGCAGCGCATTGAGCATCTCGCCCTGATGAAACGGCAGGCAGAACAGGCGGAGTCAGACAGCAACCGGAAGTTTACTGTGGAAGACGCCATCAGAACCGGCGCGTTTCTGGTGGCGATGTCCCTGTGGCATAACCATCCGCAGAAGACGCAGATGCCGTCCATGAATGAAGCCGTTAAACAGATTGAGCAGGAAGTGCTTACCACCTGGCCCACGGAGGCAATTTCTCATGCTGAAAACGTGGTGTACCGGCTGTCTGGTATGTATGAGTTTGTGGTGAATAATGCCCCTGAACAGACAGAGGACGCCGGGCCCGCAGAGCCTGTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGA