Python 安装Platypus（下一代测序变体调用程序）
我正在尝试安装Platypus（下一代测序变体调用者），并按照网站（）上的说明进行操作。我收到以下错误消息。我相信这是基本的，但任何帮助都将不胜感激。谢谢Python 安装Platypus（下一代测序变体调用程序）,python,platypus,Python,Platypus,我正在尝试安装Platypus（下一代测序变体调用者），并按照网站（）上的说明进行操作。我收到以下错误消息。我相信这是基本的，但任何帮助都将不胜感激。谢谢 ./buildPlatypus.sh Building Platypus running build running build_py copying pyvcf/__init__.py -> build/lib/pyvcf copying pyvcf/axt2variants.py -> build/lib/pyvcf copy
./buildPlatypus.sh
Building Platypus
running build
running build_py
copying pyvcf/__init__.py -> build/lib/pyvcf
copying pyvcf/axt2variants.py -> build/lib/pyvcf
copying pyvcf/bam-naive-caller.py -> build/lib/pyvcf
copying pyvcf/filez.py -> build/lib/pyvcf
copying pyvcf/vcf-add-ac.py -> build/lib/pyvcf
copying pyvcf/vcf-add-hr.py -> build/lib/pyvcf
copying pyvcf/vcf-add-labels.py -> build/lib/pyvcf
copying pyvcf/vcf-compare.py -> build/lib/pyvcf
copying pyvcf/vcf-concordance.py -> build/lib/pyvcf
copying pyvcf/vcf-diff.py -> build/lib/pyvcf
copying pyvcf/vcf-extract.py -> build/lib/pyvcf
copying pyvcf/vcf-indel-polarize.py -> build/lib/pyvcf
copying pyvcf/vcf-mendelian.py -> build/lib/pyvcf
copying pyvcf/vcf.py -> build/lib/pyvcf
running build
running build_py
copying extendedoptparse.py -> build/lib
running build
running build_py
copying window.py -> build/lib
running build
running build_py
copying variantutils.py -> build/lib
running build
running build_py
copying platypusexceptions.py -> build/lib
running build
running build_py
running build
running build_py
copying filez.py -> build/lib
running build
running build_py
copying runner.py -> build/lib
running build
running build_ext
building 'ctabix' extension
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -Itabix -Ipysam -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ctabix.c -o build/temp.macosx-10.9-intel-2.7/ctabix.o
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: command 'cc' failed with exit status 1
Finished building Platypus
python Platypus.py callVariants --help
Traceback (most recent call last):
File "Platypus.py", line 7, in <module>
import runner
File "/Users/rgrant/Desktop/NGS_Tools/Platypus_0.7.2/runner.py", line 10, in <module>
import variantcaller
ImportError: No module named variantcaller
/buildPlatypus.sh
建筑鸭嘴兽
运行构建
运行build\u py
正在复制pyvcf/_init__;.py->build/lib/pyvcf
复制pyvcf/axt2variants.py->build/lib/pyvcf
正在复制pyvcf/bam-naive-caller.py->build/lib/pyvcf
复制pyvcf/filez.py->build/lib/pyvcf
复制pyvcf/vcf-add-ac.py->build/lib/pyvcf
复制pyvcf/vcf-add-hr.py->build/lib/pyvcf
复制pyvcf/vcf-add-labels.py->build/lib/pyvcf
复制pyvcf/vcf-compare.py->build/lib/pyvcf
复制pyvcf/vcf-concordance.py->build/lib/pyvcf
复制pyvcf/vcf-diff.py->build/lib/pyvcf
复制pyvcf/vcf-extract.py->build/lib/pyvcf
复制pyvcf/vcf-indel-polarise.py->build/lib/pyvcf
复制pyvcf/vcf-mendelian.py->build/lib/pyvcf
复制pyvcf/vcf.py->build/lib/pyvcf
运行构建
运行build\u py
正在复制extendedoptparse.py->build/lib
运行构建
运行build\u py
正在复制window.py->build/lib
运行构建
运行build\u py
复制variantutils.py->build/lib
运行构建
运行build\u py
正在复制PlatypuseExceptions.py->build/lib
运行构建
运行build\u py
运行构建
运行build\u py
正在复制filez.py->build/lib
运行构建
运行build\u py
正在复制runner.py->build/lib
运行构建
运行build_ext
建筑“ctabix”扩建
cc-fno严格混叠-fno公共-动态-arch x86_64-arch i386-g-Os-pipe-fno公共-fno严格混叠-fwrapv-mno fused madd-DENABLE_DTRACE-DMACOSX-DNDEBUG-Wall-Wshorten-64-to-32-DNDEBUG-g-fwrapv-Os-Wall-Wstrict原型-DENABLE_DTRACE-arch x86_64-arch i386-pipe-Itabix-IPAM-I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7-c ctabix.c-o build/temp.macosx-10.9-intel-2.7/ctabix.o
叮当声：错误：未知参数：'-mno fused madd'[-Wunused命令行参数将来出现硬错误]
叮当声：注意：这将是一个硬错误（不能降级为警告）在未来
错误：命令“cc”失败，退出状态为1
已完工的鸭嘴兽
pythonplatypus.py调用变体--帮助
回溯（最近一次呼叫最后一次）：
文件“Platypus.py”，第7行，在
导入跑步者
文件“/Users/rgrant/Desktop/NGS_Tools/Platypus_0.7.2/runner.py”，第10行，在
导入变量计算器
ImportError:没有名为variantcaller的模块
CXX=g++