ggiraph htmlwidgets与bookdown和new_session=yes
这似乎与……有关，但我还没有弄清楚。示例是，但有问题的代码是ggiraph htmlwidgets与bookdown和new_session=yes,r,bookdown,ggiraph,R,Bookdown,Ggiraph,这似乎与……有关，但我还没有弄清楚。示例是，但有问题的代码是 p2 <- ggplot(mtcars, aes(x = disp, y = mpg)) + geom_point_interactive(aes(tooltip = car)) ggiraph(code = print(p2)) 会话信息： $ R R version 3.3.3 (2017-03-06) -- "Another Canoe" Copyright (C) 2017 The R Founda
p2 <- ggplot(mtcars, aes(x = disp, y = mpg)) +
geom_point_interactive(aes(tooltip = car))
ggiraph(code = print(p2))
$ R
R version 3.3.3 (2017-03-06) -- "Another Canoe"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin13.4.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(bookdown)
> library(rmarkdown)
> render_book("index.Rmd", "bookdown::gitbook")
processing file: index.Rmd
|................ | 25%
inline R code fragments
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 1
$ eval: logi FALSE
|................................................. | 75%
ordinary text without R code
|.................................................................| 100%
label: unnamed-chunk-2 (with options)
List of 1
$ include: logi FALSE
output file: index.knit.md
processing file: 01-intro.Rmd
|...... | 9%
ordinary text without R code
|............ | 18%
label: nice-fig (with options)
List of 4
$ fig.cap : chr "Here is a nice figure!"
$ out.width: chr "80%"
$ fig.asp : num 0.75
$ fig.align: chr "center"
|.................. | 27%
ordinary text without R code
|........................ | 36%
label: nice-tab (with options)
List of 1
$ tidy: logi FALSE
|.............................. | 45%
ordinary text without R code
|................................... | 55%
label: load-libs
|......................................... | 64%
ordinary text without R code
|............................................... | 73%
label: ggplot
|..................................................... | 82%
ordinary text without R code
|........................................................... | 91%
label: ggiraph
|.................................................................| 100%
ordinary text without R code
output file: 01-intro.knit.md
processing file: 02-literature.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 02-literature.knit.md
processing file: 03-method.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 03-method.knit.md
processing file: 04-application.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 04-application.knit.md
processing file: 05-summary.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 05-summary.knit.md
processing file: 06-references.Rmd
|.................................................................| 100%
inline R code fragments
output file: 06-references.knit.md
Error: path for html_dependency not found: /var/folders/8r/bytzpgb50dx3159xd49zgtxw0000gn/T//RtmpXcXTft/file142585251ceaa
Please delete bookdown-demo.md after you finish debugging the error.
> library(sessioninfo)
> session_info()
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 3.3.3 (2017-03-06)
os macOS Sierra 10.12.6
system x86_64, darwin13.4.0
ui X11
language (EN)
collate en_US.UTF-8
tz America/New_York
date 2017-09-29
─ Packages ───────────────────────────────────────────────────────────────────
package * version date source
assertthat 0.2.0 2017-04-11 CRAN (R 3.3.2)
backports 1.1.0 2017-05-22 CRAN (R 3.3.2)
base64enc 0.1-3 2015-07-28 CRAN (R 3.3.0)
bindr 0.1 2016-11-13 CRAN (R 3.3.2)
bindrcpp 0.2 2017-06-17 cran (@0.2)
bookdown * 0.5 2017-08-20 CRAN (R 3.3.2)
clisymbols 1.2.0 2017-05-21 CRAN (R 3.3.2)
colorspace 1.3-2 2016-12-14 CRAN (R 3.3.2)
digest 0.6.12 2017-01-27 CRAN (R 3.3.2)
dplyr 0.7.3 2017-09-09 cran (@0.7.3)
evaluate 0.10.1 2017-06-24 CRAN (R 3.3.2)
gdtools 0.1.4 2017-03-17 cran (@0.1.4)
ggiraph * 0.4.0 2017-06-24 CRAN (R 3.3.2)
ggplot2 * 2.2.1 2016-12-30 CRAN (R 3.3.2)
glue 1.1.1 2017-06-21 CRAN (R 3.3.2)
gtable 0.2.0 2016-02-26 CRAN (R 3.3.0)
htmltools 0.3.6 2017-09-27 Github (rstudio/htmltools@02678ee)
htmlwidgets 0.9 2017-09-27 Github (ramnathv/htmlwidgets@2c49516)
knitr 1.17 2017-08-10 CRAN (R 3.3.2)
lazyeval 0.2.0 2016-06-12 CRAN (R 3.3.0)
magrittr 1.5 2014-11-22 CRAN (R 3.3.0)
munsell 0.4.3 2016-02-13 CRAN (R 3.3.0)
officer 0.1.6 2017-08-30 CRAN (R 3.3.2)
pkgconfig 2.0.1 2017-03-21 cran (@2.0.1)
plyr 1.8.4 2016-06-08 CRAN (R 3.3.0)
purrr 0.2.3 2017-08-02 cran (@0.2.3)
R.methodsS3 1.7.1 2016-02-16 CRAN (R 3.3.0)
R.oo 1.21.0 2016-11-01 CRAN (R 3.3.0)
R.utils 2.5.0 2016-11-07 CRAN (R 3.3.0)
R6 2.2.2 2017-06-17 cran (@2.2.2)
Rcpp 0.12.12 2017-07-15 cran (@0.12.12)
rlang 0.1.2 2017-08-09 cran (@0.1.2)
rmarkdown * 1.6 2017-06-15 CRAN (R 3.3.2)
rprojroot 1.2 2017-01-16 CRAN (R 3.3.2)
rstudioapi 0.7.0-9000 2017-09-10 Github (rstudio/rstudioapi@8e8bfb0)
rvg 0.1.4 2017-06-23 CRAN (R 3.3.2)
scales 0.5.0 2017-08-24 CRAN (R 3.3.2)
sessioninfo * 1.0.0 2017-06-21 CRAN (R 3.3.2)
stringi 1.1.5 2017-04-07 CRAN (R 3.3.2)
stringr 1.2.0 2017-02-18 CRAN (R 3.3.2)
tibble 1.3.4 2017-08-22 cran (@1.3.4)
uuid 0.1-2 2015-07-28 CRAN (R 3.3.0)
withr 2.0.0 2017-07-28 CRAN (R 3.3.2)
xml2 1.1.1 2017-01-24 CRAN (R 3.3.3)
yaml 2.1.14 2016-11-12 CRAN (R 3.3.2)
zip 1.0.0 2017-04-25 CRAN (R 3.3.2)
```
你是对的，这是与。根本原因是，ggiraph为小部件创建HTML依赖项，而R将在退出时清理临时目录。由于您使用了
new\u会话：yes因此，您必须在使用ggiraph和
new\u会话：yes $ R
R version 3.3.3 (2017-03-06) -- "Another Canoe"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin13.4.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(bookdown)
> library(rmarkdown)
> render_book("index.Rmd", "bookdown::gitbook")
processing file: index.Rmd
|................ | 25%
inline R code fragments
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 1
$ eval: logi FALSE
|................................................. | 75%
ordinary text without R code
|.................................................................| 100%
label: unnamed-chunk-2 (with options)
List of 1
$ include: logi FALSE
output file: index.knit.md
processing file: 01-intro.Rmd
|...... | 9%
ordinary text without R code
|............ | 18%
label: nice-fig (with options)
List of 4
$ fig.cap : chr "Here is a nice figure!"
$ out.width: chr "80%"
$ fig.asp : num 0.75
$ fig.align: chr "center"
|.................. | 27%
ordinary text without R code
|........................ | 36%
label: nice-tab (with options)
List of 1
$ tidy: logi FALSE
|.............................. | 45%
ordinary text without R code
|................................... | 55%
label: load-libs
|......................................... | 64%
ordinary text without R code
|............................................... | 73%
label: ggplot
|..................................................... | 82%
ordinary text without R code
|........................................................... | 91%
label: ggiraph
|.................................................................| 100%
ordinary text without R code
output file: 01-intro.knit.md
processing file: 02-literature.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 02-literature.knit.md
processing file: 03-method.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 03-method.knit.md
processing file: 04-application.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 04-application.knit.md
processing file: 05-summary.Rmd
|.................................................................| 100%
ordinary text without R code
output file: 05-summary.knit.md
processing file: 06-references.Rmd
|.................................................................| 100%
inline R code fragments
output file: 06-references.knit.md
Error: path for html_dependency not found: /var/folders/8r/bytzpgb50dx3159xd49zgtxw0000gn/T//RtmpXcXTft/file142585251ceaa
Please delete bookdown-demo.md after you finish debugging the error.
> library(sessioninfo)
> session_info()
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 3.3.3 (2017-03-06)
os macOS Sierra 10.12.6
system x86_64, darwin13.4.0
ui X11
language (EN)
collate en_US.UTF-8
tz America/New_York
date 2017-09-29
─ Packages ───────────────────────────────────────────────────────────────────
package * version date source
assertthat 0.2.0 2017-04-11 CRAN (R 3.3.2)
backports 1.1.0 2017-05-22 CRAN (R 3.3.2)
base64enc 0.1-3 2015-07-28 CRAN (R 3.3.0)
bindr 0.1 2016-11-13 CRAN (R 3.3.2)
bindrcpp 0.2 2017-06-17 cran (@0.2)
bookdown * 0.5 2017-08-20 CRAN (R 3.3.2)
clisymbols 1.2.0 2017-05-21 CRAN (R 3.3.2)
colorspace 1.3-2 2016-12-14 CRAN (R 3.3.2)
digest 0.6.12 2017-01-27 CRAN (R 3.3.2)
dplyr 0.7.3 2017-09-09 cran (@0.7.3)
evaluate 0.10.1 2017-06-24 CRAN (R 3.3.2)
gdtools 0.1.4 2017-03-17 cran (@0.1.4)
ggiraph * 0.4.0 2017-06-24 CRAN (R 3.3.2)
ggplot2 * 2.2.1 2016-12-30 CRAN (R 3.3.2)
glue 1.1.1 2017-06-21 CRAN (R 3.3.2)
gtable 0.2.0 2016-02-26 CRAN (R 3.3.0)
htmltools 0.3.6 2017-09-27 Github (rstudio/htmltools@02678ee)
htmlwidgets 0.9 2017-09-27 Github (ramnathv/htmlwidgets@2c49516)
knitr 1.17 2017-08-10 CRAN (R 3.3.2)
lazyeval 0.2.0 2016-06-12 CRAN (R 3.3.0)
magrittr 1.5 2014-11-22 CRAN (R 3.3.0)
munsell 0.4.3 2016-02-13 CRAN (R 3.3.0)
officer 0.1.6 2017-08-30 CRAN (R 3.3.2)
pkgconfig 2.0.1 2017-03-21 cran (@2.0.1)
plyr 1.8.4 2016-06-08 CRAN (R 3.3.0)
purrr 0.2.3 2017-08-02 cran (@0.2.3)
R.methodsS3 1.7.1 2016-02-16 CRAN (R 3.3.0)
R.oo 1.21.0 2016-11-01 CRAN (R 3.3.0)
R.utils 2.5.0 2016-11-07 CRAN (R 3.3.0)
R6 2.2.2 2017-06-17 cran (@2.2.2)
Rcpp 0.12.12 2017-07-15 cran (@0.12.12)
rlang 0.1.2 2017-08-09 cran (@0.1.2)
rmarkdown * 1.6 2017-06-15 CRAN (R 3.3.2)
rprojroot 1.2 2017-01-16 CRAN (R 3.3.2)
rstudioapi 0.7.0-9000 2017-09-10 Github (rstudio/rstudioapi@8e8bfb0)
rvg 0.1.4 2017-06-23 CRAN (R 3.3.2)
scales 0.5.0 2017-08-24 CRAN (R 3.3.2)
sessioninfo * 1.0.0 2017-06-21 CRAN (R 3.3.2)
stringi 1.1.5 2017-04-07 CRAN (R 3.3.2)
stringr 1.2.0 2017-02-18 CRAN (R 3.3.2)
tibble 1.3.4 2017-08-22 cran (@1.3.4)
uuid 0.1-2 2015-07-28 CRAN (R 3.3.0)
withr 2.0.0 2017-07-28 CRAN (R 3.3.2)
xml2 1.1.1 2017-01-24 CRAN (R 3.3.3)
yaml 2.1.14 2016-11-12 CRAN (R 3.3.2)
zip 1.0.0 2017-04-25 CRAN (R 3.3.2)
```