如何在R中为以下数据写入csv文件?
我想使用登录号获得分类层次结构。我发现最简单的方法就是如何在R中为以下数据写入csv文件?,r,parsing,export-to-csv,taxonomy,blast,R,Parsing,Export To Csv,Taxonomy,Blast,我想使用登录号获得分类层次结构。我发现最简单的方法就是 library('taxize') for (year in c("AY744148.1","AY656167.1","AY656168.1")){print(paste( year))} classification(genbank2uid(id = year), db = "ncbi") R给我以下输出, 但是,我无法从该文件写入csv文件 我想要一个csv文件的结果,如下图所示 所需输出 在这方面需要你的帮助 当做 阿里·佐哈伊
library('taxize')
for (year in c("AY744148.1","AY656167.1","AY656168.1")){print(paste( year))}
classification(genbank2uid(id = year), db = "ncbi")
R给我以下输出,
但是,我无法从该文件写入csv文件
我想要一个csv文件的结果,如下图所示
所需输出
在这方面需要你的帮助
当做
阿里·佐哈伊布也许你想要这样的东西
library('taxize')
IDs <- c("AY744148.1","AY656167.1","AY656168.1") # your sequence of ids to iterate over
output <- vector("list", length(years)) # prepare a list to write to
# for each ID, run the function and store the result into a list
for (i in 1:length(years)) {
# output is a list of length one, so we need to subset it using "[["
output[[i]] <- classification(genbank2uid(id = IDs[i]), db = "ncbi")[[1]]
}
# take list elements of output and merge them row-wise (rbind == row bind)
output <- do.call(rbind, output)
name rank id
1 other sequences no rank 28384
2 artificial sequences no rank 81077
3 vectors no rank 29278
4 Cloning vector pBR322 species 47470
5 other sequences no rank 28384
6 artificial sequences no rank 81077
7 vectors no rank 29278
8 Cloning vector pGEM-3 species 90108
9 other sequences no rank 28384
10 artificial sequences no rank 81077
11 vectors no rank 29278
12 Cloning vector pGEM-3 species 90108
您将需要一个for()
循环,或者可能是sapply
或apply系列的其他函数。谢谢先生,for()函数解决了输入数据的问题。现在我面临的是如何从输出中写入csv文件。我已经更新了我的问题
write.table(output, file = "endfile.txt", row.names = FALSE, quote = FALSE)