给定列的最小值,在其他列中查找最小值(dplyr)

给定列的最小值,在其他列中查找最小值(dplyr),r,dplyr,tidyverse,R,Dplyr,Tidyverse,假设R中有以下数据集: > td Type Rep Value1 Value2 1 A 1 7 1 2 A 2 5 4 3 A 3 5 3 4 A 4 8 2 5 B 1 5 10 6 B 2 6 1 7 B 3 7 1 8 C 1 8 13 9

假设R中有以下数据集:

> td
  Type Rep Value1 Value2
1    A   1      7      1
2    A   2      5      4
3    A   3      5      3
4    A   4      8      2
5    B   1      5     10
6    B   2      6      1
7    B   3      7      1
8    C   1      8     13
9    C   2      8     13

> td <- structure(list(Type = structure(c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 
3L, 3L), .Label = c("A", "B", "C"), class = "factor"), Rep = c(1L, 
2L, 3L, 4L, 1L, 2L, 3L, 1L, 2L), Value1 = c(7L, 5L, 5L, 8L, 5L, 
6L, 7L, 8L, 8L), Value2 = c(1L, 4L, 3L, 2L, 10L, 1L, 1L, 13L, 
13L)), .Names = c("Type", "Rep", "Value1", "Value2"), class = "data.frame",
row.names = c(NA, -9L))
在此表中,数据按类型汇总。列MinValue1是特定类型的最小值,列MinValue2是Value2的最小值,给定列Value1的最小值。列平均值*是所有观测值的总平均值

一种方法是实现循环,循环遍历每种类型并进行计算。然而,我正在寻找一种更好/简单/美观的方法来执行这种操作

我玩过tidyverse的工具:

> library(tidyverse)
> td %>% 
     group_by(Type) %>% 
     summarise(MinValue1 = min(Value1), 
               MeanValue1 = mean(Value1),
               MeanValue2 = mean(Value2))
# A tibble: 3 × 4
    Type MinValue1 MeanValue1 MeanValue2
  <fctr>    <int>       <dbl>      <dbl>
1      A        5        6.25        2.5
2      B        5        6.00        4.0
3      C        8        8.00       13.0
请注意,这里没有列MinValue2。还要注意,总结…,MinValue2=MinValue2。。。由于此解决方案对一种类型的所有观测值取最小值,因此不起作用

我们可以使用slice,然后合并结果:

> td %>% group_by(Type) %>% slice(which.min(Value1))
Source: local data frame [3 x 4]
Groups: Type [3]

    Type   Rep Value1 Value2
  <fctr> <int>  <int>  <int>
1      A     3      5      4
2      B     1      5     10
3      C     1      8     13
但是请注意,slice工具在这里对我们没有帮助:类型A,Value1 5在slice返回时应该有Value2==3,而不是==4


那么,你们有没有一种优雅的方式来实现我所追求的结果?谢谢

按“类型”分组后,根据选择与最小值“Value1”相对应的元素,创建另一个最小值为“Value2”的组,使用Summary_获得所选列“Value1”和“Value2”的最小值和平均值,并使用select删除“Value2_min”


一种方法是使用order函数的属性断开与另一个向量的联系:

get_min_at_min <- function(vec1, vec2) {
  return(vec2[order(vec1, vec2)[1]])
}
或者简单地使用一个事实,即可以在dplyr函数中处理计算变量:

td %>% 
  group_by(Type) %>% 
  summarise(MinValue1 = min(Value1),
            MinValue2 = min(Value2[Value1 == MinValue1]),
            MeanValue1 = mean(Value1),
            MeanValue2 = mean(Value2))

非常感谢@evgeniC和@akrun。你的帮助很有价值。就我的目的/数据集而言,这两种解决方案都非常有效。因此,为了让讨论更加丰富,我运行了一些实验来测试这些建议的速度,使用以下脚本,当然还有对每个实验的注释/取消注释:

library(tidyverse)

args <- commandArgs(TRUE)
set.seed(args[1])
n = args[2]

td = data.frame(Type = sample(LETTERS, n, replace=T),
                Value1 = sample(1:100, n, replace=T),
                Value2 = sample(1:100, n, replace=T))

ptm <- proc.time()

# Solution 1 ###
#get_min_at_min <- function(vec1, vec2) {
  #return(vec2[order(vec1, vec2)[1]])
#}

#tmp <- td %>%
       #group_by(Type) %>%
       #summarise(MinValue1 = min(Value1),
                 #MinValue2 = get_min_at_min(Value1, Value2),
                 #MeanValue1 = mean(Value1),
                 #MeanValue2 = mean(Value2))

### Solution 2 ###
tmp <- td %>%
       group_by(Type) %>%
       summarise(MinValue1 = min(Value1),
                 MinValue2 = min(Value2[Value1 == MinValue1]),
                 MeanValue1 = mean(Value1),
                 MeanValue2 = mean(Value2))

### Solution 3 ###
#tmp <- td %>%
       #group_by(Type) %>%
       #group_by(MinValue2 = min(Value2[Value1==min(Value1)]), add=TRUE) %>%
       #summarise_each(funs(min, mean), Value1:Value2) %>%
       #select(-Value2_min)

print(proc.time() - ptm)
使用

我们得到了以下结果:

       Alg User_mean System_mean Elapsed_mean    User_sd   System_sd Elapsed_sd
1    akrun 1.3643333  0.13766667     1.510333 0.01069268 0.005033223 0.02050203
2 evgeniC1 0.8706667  0.07466667     0.951000 0.03323151 0.003055050 0.04073082
3 evgeniC2 0.8600000  0.09300000     0.958000 0.05546170 0.005196152 0.06331666

因此,我倾向于使用@evgeniC的解决方案2,因为它是最优雅/简单的,并且与解决方案1一样快@akrun提出了一个很好的解决方案,但它有点复杂和缓慢。无论如何,该设置在其他情况下也很有用。

非常感谢。最后一个选项是我要找的。@akrun的答案在输入数据中有很多列的情况下更好:这样可以节省键入时间。此外,我还推荐使用微基准测试性能的方法,例如查看
td %>% 
  group_by(Type) %>% 
  summarise(MinValue1 = min(Value1),
            MinValue2 = min(Value2[Value1 == MinValue1]),
            MeanValue1 = mean(Value1),
            MeanValue2 = mean(Value2))
library(tidyverse)

args <- commandArgs(TRUE)
set.seed(args[1])
n = args[2]

td = data.frame(Type = sample(LETTERS, n, replace=T),
                Value1 = sample(1:100, n, replace=T),
                Value2 = sample(1:100, n, replace=T))

ptm <- proc.time()

# Solution 1 ###
#get_min_at_min <- function(vec1, vec2) {
  #return(vec2[order(vec1, vec2)[1]])
#}

#tmp <- td %>%
       #group_by(Type) %>%
       #summarise(MinValue1 = min(Value1),
                 #MinValue2 = get_min_at_min(Value1, Value2),
                 #MeanValue1 = mean(Value1),
                 #MeanValue2 = mean(Value2))

### Solution 2 ###
tmp <- td %>%
       group_by(Type) %>%
       summarise(MinValue1 = min(Value1),
                 MinValue2 = min(Value2[Value1 == MinValue1]),
                 MeanValue1 = mean(Value1),
                 MeanValue2 = mean(Value2))

### Solution 3 ###
#tmp <- td %>%
       #group_by(Type) %>%
       #group_by(MinValue2 = min(Value2[Value1==min(Value1)]), add=TRUE) %>%
       #summarise_each(funs(min, mean), Value1:Value2) %>%
       #select(-Value2_min)

print(proc.time() - ptm)
$ Rscript test.R 270001 10000000
> td %>% group_by(Alg) %>% summarise_each(funs(mean, sd), User:Elapsed)
       Alg User_mean System_mean Elapsed_mean    User_sd   System_sd Elapsed_sd
1    akrun 1.3643333  0.13766667     1.510333 0.01069268 0.005033223 0.02050203
2 evgeniC1 0.8706667  0.07466667     0.951000 0.03323151 0.003055050 0.04073082
3 evgeniC2 0.8600000  0.09300000     0.958000 0.05546170 0.005196152 0.06331666