Scala java.io.EOFException不是空文件上的SequenceFile
我正试着用spark阅读表格Scala java.io.EOFException不是空文件上的SequenceFile,scala,apache-spark,hadoop,sequencefile,Scala,Apache Spark,Hadoop,Sequencefile,我正试着用spark阅读表格 spark.table("table_name") sc.sequenceFile(path, classOf[Text], classOf[Text], 1000). map(x => x._2.toString.split(delimiter, -1)) 如果没有空文件,这两种方法都有效;如果表中包含空文件,则这两种方法都会因java.io.eofeexception:/path/to/file/1612735495084_12e
spark.table("table_name")
sc.sequenceFile(path, classOf[Text], classOf[Text], 1000).
map(x => x._2.toString.split(delimiter, -1))
如果没有空文件,这两种方法都有效;如果表中包含空文件,则这两种方法都会因java.io.eofeexception:/path/to/file/1612735495084_12eed62a-b1ee-4cf5-8b71-a87149acd9c8.sf而失败
设置spark.sql.files.ignoreCorruptFiles=true
没有帮助。似乎0字节文件未被视为已损坏
我不能修改源表,只能修改我自己的代码。在读取此表时是否有方法忽略空文件
使用spark 2.2、scala 2.11
diagnostics: User class threw exception: org.apache.spark.SparkException: Job aborted.
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:224)
at org.apache.spark.sql.hive.execution.SaveAsHiveFile$class.saveAsHiveFile(SaveAsHiveFile.scala:86)
at org.apache.spark.sql.hive.execution.InsertIntoHiveTable.saveAsHiveFile(InsertIntoHiveTable.scala:66)
at org.apache.spark.sql.hive.execution.InsertIntoHiveTable.processInsert(InsertIntoHiveTable.scala:195)
at org.apache.spark.sql.hive.execution.InsertIntoHiveTable.run(InsertIntoHiveTable.scala:99)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:656)
at org.apache.spark.sql.DataFrameWriter.insertInto(DataFrameWriter.scala:322)
at org.apache.spark.sql.DataFrameWriter.insertInto(DataFrameWriter.scala:308)
at ru.gjin.gjin.system.Main$.delayedEndpoint$ru$gjin$gjin$system$Main$1(Main.scala:30)
at ru.gjin.gjin.system.Main$delayedInit$body.apply(Main.scala:12)
at scala.Function0$class.apply$mcV$sp(Function0.scala:34)
at scala.runtime.AbstractFunction0.apply$mcV$sp(AbstractFunction0.scala:12)
at scala.App$$anonfun$main$1.apply(App.scala:76)
at scala.App$$anonfun$main$1.apply(App.scala:76)
at scala.collection.immutable.List.foreach(List.scala:381)
at scala.collection.generic.TraversableForwarder$class.foreach(TraversableForwarder.scala:35)
at scala.App$class.main(App.scala:76)
at ru.gjin.gjin.system.Main$.main(Main.scala:12)
at ru.gjin.gjin.system.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$4.run(ApplicationMaster.scala:721)
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Task 36305 in stage 9.0 failed 4 times, most recent failure: Lost task 36305.3 in stage 9.0 (TID 2694, hdp3-sp-024.dmp.vimpelcom.ru, executor 6): java.io.EOFException: host/path/to/file/1612735487120_c186faf5-72c0-4747-884b-58ce29433906.sf not a SequenceFile
at org.apache.hadoop.io.SequenceFile$Reader.init(SequenceFile.java:1964)
at org.apache.hadoop.io.SequenceFile$Reader.initialize(SequenceFile.java:1923)
at org.apache.hadoop.io.SequenceFile$Reader.<init>(SequenceFile.java:1872)
at org.apache.hadoop.io.SequenceFile$Reader.<init>(SequenceFile.java:1886)
at org.apache.hadoop.mapred.SequenceFileRecordReader.<init>(SequenceFileRecordReader.java:49)
at org.apache.hadoop.mapred.SequenceFileInputFormat.getRecordReader(SequenceFileInputFormat.java:64)
at org.apache.spark.rdd.HadoopRDD$$anon$1.liftedTree1$1(HadoopRDD.scala:257)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:256)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:214)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:94)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:105)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1651)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1639)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1638)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1638)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1872)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1821)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1810)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2034)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194)
... 37 more
Caused by: java.io.EOFException: host/path/to/file/1612735487120_c186faf5-72c0-4747-884b-58ce29433906.sf not a SequenceFile
at org.apache.hadoop.io.SequenceFile$Reader.init(SequenceFile.java:1964)
at org.apache.hadoop.io.SequenceFile$Reader.initialize(SequenceFile.java:1923)
at org.apache.hadoop.io.SequenceFile$Reader.<init>(SequenceFile.java:1872)
at org.apache.hadoop.io.SequenceFile$Reader.<init>(SequenceFile.java:1886)
at org.apache.hadoop.mapred.SequenceFileRecordReader.<init>(SequenceFileRecordReader.java:49)
at org.apache.hadoop.mapred.SequenceFileInputFormat.getRecordReader(SequenceFileInputFormat.java:64)
at org.apache.spark.rdd.HadoopRDD$$anon$1.liftedTree1$1(HadoopRDD.scala:257)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:256)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:214)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:94)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:105)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:288)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:109)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
diagnostics:User类引发异常:org.apache.spark.SparkException:作业中止。
位于org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:224)
位于org.apache.spark.sql.hive.execution.SaveAsHiveFile$class.SaveAsHiveFile(SaveAsHiveFile.scala:86)
位于org.apache.spark.sql.hive.execution.InsertIntoHiveTable.saveAsHiveFile(InsertIntoHiveTable.scala:66)
位于org.apache.spark.sql.hive.execution.InsertIntoHiveTable.processInsert(InsertIntoHiveTable.scala:195)
位于org.apache.spark.sql.hive.execution.InsertIntoHiveTable.run(InsertIntoHiveTable.scala:99)
位于org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
位于org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
位于org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
位于org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
位于org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
位于org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
位于org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
位于org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
位于org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
位于org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
位于org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
位于org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
位于org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
位于org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
位于org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:656)
位于org.apache.spark.sql.DataFrameWriter.insertInto(DataFrameWriter.scala:322)
位于org.apache.spark.sql.DataFrameWriter.insertInto(DataFrameWriter.scala:308)
在ru.gjin.gjin.system.Main$.delayedEndpoint$ru$gjin$gjin$system$Main$1(Main.scala:30)
在ru.gjin.gjin.system.Main$delayedInit$body.apply(Main.scala:12)
在scala.Function0$class.apply$mcV$sp处(Function0.scala:34)
在scala.runtime.AbstractFunction0.apply$mcV$sp(AbstractFunction0.scala:12)中
位于scala.App$$anonfun$main$1.apply(App.scala:76)
位于scala.App$$anonfun$main$1.apply(App.scala:76)
位于scala.collection.immutable.List.foreach(List.scala:381)
位于scala.collection.generic.TraversableForwarder$class.foreach(TraversableForwarder.scala:35)
位于scala.App$class.main(App.scala:76)
在ru.gjin.gjin.system.Main$.Main(Main.scala:12)
at ru.gjin.gjin.system.Main.Main(Main.scala)
在sun.reflect.NativeMethodAccessorImpl.invoke0(本机方法)处
位于sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
在sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)中
位于java.lang.reflect.Method.invoke(Method.java:498)
位于org.apache.spark.deploy.warn.ApplicationMaster$$anon$4.run(ApplicationMaster.scala:721)
原因:org.apache.spark.SparkException:作业因阶段失败而中止:阶段9.0中的任务36305失败4次,最近的失败:阶段9.0中的任务36305.3丢失(TID 2694,hdp3-sp-024.dmp.vimpelcom.ru,executor 6):java.io.EOFException:host/path/to/file/1612735487120_c186faf5-72c0-4747-884b-58ce29433906.sf不是序列文件
位于org.apache.hadoop.io.SequenceFile$Reader.init(SequenceFile.java:1964)
位于org.apache.hadoop.io.SequenceFile$Reader.initialize(SequenceFile.java:1923)
位于org.apache.hadoop.io.SequenceFile$Reader。(SequenceFile.java:1872)
位于org.apache.hadoop.io.SequenceFile$Reader。(SequenceFile.java:1886)
位于org.apache.hadoop.mapred.SequenceFileRecordReader。(SequenceFileRecordReader.java:49)
位于org.apache.hadoop.mapred.SequenceFileInputFormat.getRecordReader(SequenceFileInputFormat.java:64)
位于org.apache.spark.rdd.HadoopRDD$$anon$1.liftedTree1$1(HadoopRDD.scala:257)
位于org.apache.spark.rdd.HadoopRDD$$anon$1。(HadoopRDD.scala:256)
位于org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:214)
位于org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:94)
在org.apache.spark.rdd.rdd.computeOrReadCheckpoint(rdd.scala:324)
位于org.apache.spark.rdd.rdd.iterator(rdd.scala:288)
在org.apache.spark.rdd.MapPartitionsRDD.compute上(MapPartitionsRDD.scala:49)
在org.apache.spark.rdd.rdd.computeOrReadCheckpoint(rdd.scala:324)
位于org.apache.spark.rdd.rdd.iterator(rdd.scala:288)
在org.apache.spark.rdd.MapPartitionsRDD.compute上(MapPartitionsRDD.scala:49)
在org.apache.spark.rdd.rdd.computeOrReadCheckpoint(rdd.scala:324)
位于org.apache.spark.rdd.rdd.iterator(rdd.scala:288)
位于org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:105)
在org.apache.spark.rdd.rdd.computeOrReadCheckpoint(rdd.scala:324)
位于org.apache.spark.rdd.rdd.iterator(rdd.scala:288)
在org.apache.spark.rdd.MapPartitionsRDD.compute上(MapPartitionsRDD.scala:49)
在org.apache.spark.rdd.rdd.computeOrReadCheckpoint(rdd.scala:324)
位于org.apache.spark.rdd.rdd.iterator(rdd.scala:288)
在org.apache.spark.rdd.M上
SEQ^F!org.apache.hadoop.io.LongWritable!org.apache.hadoop.io.LongWritable^A^@*org.apache.hadoop.io.compress.DefaultCodec^@^@^@^@ï<9c>p<84>º74K=æÅ3!<92>^A^F